Detailed information on CNT0002089 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SFU6|CALS9_ARATH, E-value = 7e-31

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002089

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)27.62720.79514.65700.3260.5121.2030.150000.08000.095leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)024681012141618202224262830

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MEEDYLTNFEMELLLKPRNFGDLPLVQWPLFILASKN*

>peptide 2 (133 aa)
MYFSLRKREELESFWVLKSKDRWEKVYAVLACYFECKICVCLLSLDKALVDPTRAIIKEDNINYSWHDFVSKNNQNALTIVNVWAPVVAIYLLDIYVFYT
LVLAVYGFLQGARDRLGEVSSIVKLWFTNDKSF*

Sequence

>CNT0002089
TGGATGCAGAGTTGAAGCAGCAGTAGCAAGATCAAGTTCGCCTGGACTTTTGGGATAAATAGTCCAATCATCTCTTTACAAGGAATAATCTTCATCCATC
CTTTCTTCATGTATTTCTCTCTAAGGAAAAGAGAAGAGCTTGAATCATTTTGGGTTCTGAAGAGTAAAGATAGGTGGGAAAAGGTATATGCTGTTTTGGC
TTGTTATTTTGAGTGCAAAATTTGCGTTTGCTTACTTTCTTTAGATAAGGCCTTGGTGGACCCAACAAGGGCTATTATAAAAGAGGATAATATAAATTAC
TCTTGGCATGATTTTGTCTCTAAAAATAATCAAAATGCTTTGACAATTGTTAACGTGTGGGCTCCTGTGGTTGCTATTTATCTTCTAGATATTTATGTGT
TTTACACACTTGTATTGGCTGTCTATGGATTCTTACAGGGGGCAAGAGATCGACTGGGAGAGGTAAGTAGTATTGTTAAGTTGTGGTTTACCAACGATAA
ATCCTTTTGATAATTTGTCGTGTTATTATTAATATCTTTTACCTATTGCTAGTCTTGTCCTGTACATTTCAGAATTTAAGAGTAGTTGGTATAACTATTT
TGTGGCCGTATGTGGTCAACAGATTAGGTCATTTGAAGCACTGCATAGACTTTTGAGTAGTTTCCTAGAGCTTTTATGGACACACTTCATGTTCCTCTAC
CCAATAGGTGCTGCTTGTTAAATGTTCTTTTTCCTGTTTTATGATTTTCATTCTGTATTTGGAAGATAGTTGTATGTGTATGTGTCCTATCTCTGTTGTA
GCTCTCTGAGAATATATGCTCTCTACTTTCATATTTTCCCCTTAAATAGTATTGTTACTCTATAAGCTTATTTAGTTCTTCTCGATATTTTATATTTTCA
GGAGTTCCCATCAAAATTCTGTTCAGGTTGTGGAGAAAAACAAGGTTGATACTGCTCGGTTTTGCCCCCTTTTGGCATGAGATCATAAGGAATCTAATGG
AGGAGGATTACCTAACCAACTTTGAAATGGAGTTGCTTTTAAAGCCTAGGAATTTTGGGGATCTTCCTTTGGTTCAATGGCCACTTTTTATACTTGCAAG
CAAGAATTGAAAAGAAGATTTCAAGTGATTTAGAAGAAATTTGACGAAAAATTGAAGAAGAAAAAGAAGACAGTTTGCTTAACGCACACTGTAGGCCCAA
CACACATCTCACTTGGCGCGTAGGTCTTGCTTAGCACGTGTACTCGCTTAGGGCGCAGATCTGGCTTAGCGCGAGAAGGCCTACAAAGAAAAGTCCAGTA
CACGCTTAGCGCACAGATGCACGCTCAGCATACAGTCAGCGTGAAAAGTAAATTACCTTAAGCCTATAAAAGGAGTAGAAAGCTGACGGAAAAGACACAT
TGACTCTCAAAGCTTTCCAATGCAGAAATCCAAAACTTGAGTCTCTCCCTTAGGAGAAACCTCTCTTCCTTAGTTGTTCCCCTCTTCTTGTATTATTCAT
TTATCACCTTCTTTCATTAACCCCTGGAGTGTAAAGTCTCTCATGATCATGAGAGGCTAAATCCCCACTATTGGGTACTTGGAGGCCAAAACACTTGAAA
TGTAATTCTATTTCCATTATTCTTCTCTGTGCTTATTTGTTATTATGGTCTGATTACCCATATACTGTTTGGAAGGTTATGCATTAAAAATGTTTATTTT
ATAAAGAACTGGGGAAGGGTATCTTAATAAAATTCAC