Detailed information on CNT0002092 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002092

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MDCLEKTYQIMEGLYMPLVICTSGIHTYILVAKNQLVLEVLIYTTNFVSQTR*

>peptide 2 (34 aa)
MLSTWTVSKRRIRLWKASICLLSSAPVAYTPIYW*

>peptide 3 (76 aa)
MPSTSSSRLQISCFHKDSSFSLVKGKAKFPQIHIMCTALGEDNLPCGSRATRIAFFEKFHTSLMYLTADGSMMKGS*

>peptide 4 (64 aa)
MSFQVALSTIGIHTISYCVSPLARASLYKLSSTRISSCERSRSDISSNTCFLLSTSRLTCYIKI*

>peptide 5 (29 aa)
MYSDGSSLNSTMHMVTSIAAFTSLMSASK*

>peptide 6 (71 aa)
MPSMIANTQTSVCSCHSRLLCPQLGSIPSRIACRPLLAHPCTNCQVPGSLLVKDQDLILAATHVSSLVPRD*

>peptide 7 (45 aa)
MRFHGHEILSNVRQLLKEGHRLGKRVFSTQLSNKPKLSKNNGKGC*

Sequence

>CNT0002092
TAGTGAGTTTATTTTTTGATAATATTATTGGAAAAAGTAATTTCATGCTTTCTTGATATTCTTAAGTAACAATAATTTGAGACTGAGGATTATTGCAGAA
GTGACAAATAAATAAGACGGACAGAGAATTTTGTTACCCATTCTAAAACTGTAGGATCAATGCCATCAACAAGCAGCTCAAGGCTCCAAATCTCTTGCTT
CCACAAGGATTCTTCTTTCTCACTTGTGAAGGGGAAGGCCAAATTTCCCCAAATCCATATCATGTGCACAGCATTAGGGGAGGACAATCTGCCTTGTGGA
TCAAGGGCCACTAGAATAGCTTTCTTTGAGAAATTCCACACTTCTTTGATGTACTTAACTGCTGATGGTTCAATGATGAAAGGATCATAGACACTGTACC
ATGCCATCAATGATTGCAAATACTCAAACTTCTGTTTGCTCATGTCATTCCAGGTTGCTTTGTCCACAATTGGGATCCATACCATCTCGTATTGCGTGTC
GCCCCTTGCTCGCGCATCCTTGTACAAATTGTCAAGTACCAGGATCTCTTCTTGTGAAAGATCAAGATCTGATATTAGCAGCAACACATGTTTCCTCCTT
AGTACCTCGAGACTAACCTGTTATATCAAAATATAAGTCAATGTCATGAAACTATGGTACAAATAAGGTGTATTTTCATAAGGACTACATGTTACTAAAA
TCAAACCCTTGATTTTGCAGTTCCATCTACAAGTGGAAGAACATCATCCTTTGCATATATCAGTGCTCTGAGAATTTTCATGTTGTCTACATGGACTGTC
TCGAAAAGACGTATCAGATTATGGAAGGCCTCTATATGCCTCTTGTCATCTGCACCAGTGGCATACACACCTATATATTGGTAGCAAAGAACCAGTTGGT
TCTTGAGGTGCTCATATATACTACTAACTTTGTGAGCCAGACTAGATAATTCCCATGCCTCTGTGGTTGATGAAATGGACCTGCAAAAATCAACAAAATG
TGGTCACTACTATTTCAAAAAACAATTGAGTTGATGTAAGTGATGGAACTATACACTATGCTTACTCATTTCTCATGCCTATGAAACTAGAAATTTGTGA
GGAACAAGCCACAATACTTCTGATGACCCAATAGGAAGCAATAGGAATGTGAGTACTTGCAACAGACATAGGAGGAGTATCCTCAGAGATGTATTCAGAT
GGTAGCTCCTTGAATTCAACAATGCACATGGTTACATCCATCGCCGCCTTCACGAGCCTAATGAGTGCTTCAAAATGAGGTTTCATGGACATGAAATTCT
CAGCAATGTCAGGCAGTTGCTTAAGGAGGGCCACAGACTTGGCAAGCGTGTTTTCAGCACTCAACTGAGCAACAAGCCAAAACTCTCCAAAAATAACGGC
AAAGGCTGCTAAGGTTAGCACAACTTTCGCATGCCATGCATAGCTAGAGATGTAATTCAGTAACACCATTGTTGAGGAATGTGCATCTCCACCTCCCGAG
CACTTGCATGATAGCTGCCAATATAGTCAGGAACTGCTCTTTAATGACTTATCTAGATCCCTTCATTTTAGACTTCAGAGAAGGGAAATTTTGATTGAAA
TCAACAAGGAAATACTTTAACATATTCAAGAATTACTCGATGAGATAAATAGTCCAAAGAATTCCAAAAGACAACCAAAGGCTTTAATTATAAATACTTG
CAACTAAATGCATATGAAAGCTACCTATCTAAGTGTATTTTCTTTTAGAGTAATAATATATAGGACATTCGCATAGTATATATACCCAA

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G36440.2 Sieve element occlusion c; Uncharacterized protein protein coding CNT0002092 1786 864 CDS Trans
GLYMA04G36440.2 Sieve element occlusion c; Uncharacterized protein protein coding CNT0002092 1875 868 CDS Trans
GLYMA06G18430.2 Sieve element occlusion d; Uncharacterized protein protein coding CNT0002092 2522 909 CDS Cis
GLYMA06G18430.2 Sieve element occlusion d; Uncharacterized protein protein coding CNT0002092 2376 858 CDS Cis