Detailed information on CNT0002092 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002092

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.9970.60.47700.07900.2340.9490000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.750.80.850.90.9511.…1.05

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MDCLEKTYQIMEGLYMPLVICTSGIHTYILVAKNQLVLEVLIYTTNFVSQTR*

>peptide 2 (34 aa)
MLSTWTVSKRRIRLWKASICLLSSAPVAYTPIYW*

>peptide 3 (76 aa)
MPSTSSSRLQISCFHKDSSFSLVKGKAKFPQIHIMCTALGEDNLPCGSRATRIAFFEKFHTSLMYLTADGSMMKGS*

>peptide 4 (64 aa)
MSFQVALSTIGIHTISYCVSPLARASLYKLSSTRISSCERSRSDISSNTCFLLSTSRLTCYIKI*

>peptide 5 (29 aa)
MYSDGSSLNSTMHMVTSIAAFTSLMSASK*

>peptide 6 (71 aa)
MPSMIANTQTSVCSCHSRLLCPQLGSIPSRIACRPLLAHPCTNCQVPGSLLVKDQDLILAATHVSSLVPRD*

>peptide 7 (45 aa)
MRFHGHEILSNVRQLLKEGHRLGKRVFSTQLSNKPKLSKNNGKGC*

Sequence

>CNT0002092
TAGTGAGTTTATTTTTTGATAATATTATTGGAAAAAGTAATTTCATGCTTTCTTGATATTCTTAAGTAACAATAATTTGAGACTGAGGATTATTGCAGAA
GTGACAAATAAATAAGACGGACAGAGAATTTTGTTACCCATTCTAAAACTGTAGGATCAATGCCATCAACAAGCAGCTCAAGGCTCCAAATCTCTTGCTT
CCACAAGGATTCTTCTTTCTCACTTGTGAAGGGGAAGGCCAAATTTCCCCAAATCCATATCATGTGCACAGCATTAGGGGAGGACAATCTGCCTTGTGGA
TCAAGGGCCACTAGAATAGCTTTCTTTGAGAAATTCCACACTTCTTTGATGTACTTAACTGCTGATGGTTCAATGATGAAAGGATCATAGACACTGTACC
ATGCCATCAATGATTGCAAATACTCAAACTTCTGTTTGCTCATGTCATTCCAGGTTGCTTTGTCCACAATTGGGATCCATACCATCTCGTATTGCGTGTC
GCCCCTTGCTCGCGCATCCTTGTACAAATTGTCAAGTACCAGGATCTCTTCTTGTGAAAGATCAAGATCTGATATTAGCAGCAACACATGTTTCCTCCTT
AGTACCTCGAGACTAACCTGTTATATCAAAATATAAGTCAATGTCATGAAACTATGGTACAAATAAGGTGTATTTTCATAAGGACTACATGTTACTAAAA
TCAAACCCTTGATTTTGCAGTTCCATCTACAAGTGGAAGAACATCATCCTTTGCATATATCAGTGCTCTGAGAATTTTCATGTTGTCTACATGGACTGTC
TCGAAAAGACGTATCAGATTATGGAAGGCCTCTATATGCCTCTTGTCATCTGCACCAGTGGCATACACACCTATATATTGGTAGCAAAGAACCAGTTGGT
TCTTGAGGTGCTCATATATACTACTAACTTTGTGAGCCAGACTAGATAATTCCCATGCCTCTGTGGTTGATGAAATGGACCTGCAAAAATCAACAAAATG
TGGTCACTACTATTTCAAAAAACAATTGAGTTGATGTAAGTGATGGAACTATACACTATGCTTACTCATTTCTCATGCCTATGAAACTAGAAATTTGTGA
GGAACAAGCCACAATACTTCTGATGACCCAATAGGAAGCAATAGGAATGTGAGTACTTGCAACAGACATAGGAGGAGTATCCTCAGAGATGTATTCAGAT
GGTAGCTCCTTGAATTCAACAATGCACATGGTTACATCCATCGCCGCCTTCACGAGCCTAATGAGTGCTTCAAAATGAGGTTTCATGGACATGAAATTCT
CAGCAATGTCAGGCAGTTGCTTAAGGAGGGCCACAGACTTGGCAAGCGTGTTTTCAGCACTCAACTGAGCAACAAGCCAAAACTCTCCAAAAATAACGGC
AAAGGCTGCTAAGGTTAGCACAACTTTCGCATGCCATGCATAGCTAGAGATGTAATTCAGTAACACCATTGTTGAGGAATGTGCATCTCCACCTCCCGAG
CACTTGCATGATAGCTGCCAATATAGTCAGGAACTGCTCTTTAATGACTTATCTAGATCCCTTCATTTTAGACTTCAGAGAAGGGAAATTTTGATTGAAA
TCAACAAGGAAATACTTTAACATATTCAAGAATTACTCGATGAGATAAATAGTCCAAAGAATTCCAAAAGACAACCAAAGGCTTTAATTATAAATACTTG
CAACTAAATGCATATGAAAGCTACCTATCTAAGTGTATTTTCTTTTAGAGTAATAATATATAGGACATTCGCATAGTATATATACCCAA

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G36440.2 Sieve element occlusion c; Uncharacterized protein protein coding CNT0002092 1786 864 CDS Trans
GLYMA04G36440.2 Sieve element occlusion c; Uncharacterized protein protein coding CNT0002092 1875 868 CDS Trans
GLYMA06G18430.2 Sieve element occlusion d; Uncharacterized protein protein coding CNT0002092 2522 909 CDS Cis
GLYMA06G18430.2 Sieve element occlusion d; Uncharacterized protein protein coding CNT0002092 2376 858 CDS Cis