Detailed information on CNT0002095 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LVP9|VTI13_ARATH, E-value = 1e-21

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002095

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.1380.6620.33800.5250.330.5160.3630.5390.8620.5860.2560.9950.3770.153leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.750.80.850.90.9511.…1.05

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MQGKLQMSKNLHHAIVPTLSNPNIHIRLQSFNMFYKCTMHYNFGSPHTG*

>peptide 2 (30 aa)
LQHCFSALLYSVRGLIKSFSRHQKSSFLII*

Sequence

>CNT0002095
CTCCAGCATTGTTTTTCTGCTCTCCTTTATTCTGTCAGAGGACTGATTAAGTCTTTCAGTAGACATCAGAAGTCTTCCTTTTTGATCATTTGATACTGTA
GTACATACGAAGCATAGTACTGAGATGCAAGGGAAATTGCAAATGTCAAAGAATCTACATCATGCAATTGTTCCCACTCTCTCCAACCCTAACATACATA
TAAGACTTCAGTCATTTAATATGTTTTATAAATGTACCATGCATTACAATTTTGGAAGCCCACATACTGGCTAACTTTGGCTTGAAGACAATTAACAACT
TTTACTTCCAAAAAGCCTTTAGGACAATAAAATTTACCAGGCAATCCCAGTCTCAGGTCTCCCAACTAGTGTATCTGAATCTTCTTAAATATGTATTAGT
AATCTAAGCCACAGTTCAAAAATAATAACATTGACACCTATTAATATCTGAGGAAGGATATATAAGAGAGATACCGCCAGTGTATCAGCCCTTCCTGACT
CCAACAAGTCATCTCGAGCAGTGAGATTGACGCTAGCTGACGTGACTCTTTTAACTTCACTTTTCAAATTGCTCAAATCAGTTTTATATTCCCTTAACTT
GGCAAGAAGAGCTGCCTTCACGCTTGGCTGCAAACTCCTAGCCTCAAGGTCCATTTTTCGAATCTGAAAATATTCAAGCAGGAATTATAATAGAGTCAAA
CATCTGGAGGATGAACAGAGGAAAAGTTCCATTATACCAATGTGTCAGCATCATCTAATCCAGCTTTTATATCAGAAAGTTTTTGCTTCTTTTGTTCTGC
AGCACAAATGGTAACCAGCAAACATTAGACAGAAAAGCTACAGTTTTTTCCCTTCTTTTCCTGATTTTGTGTGTATGTGCGTTGGGAGAGGGGGGAGTTG
ATAAAAAATTGCATCCTTAACAAATGAGCTTAAGCCTCTTTGATGAAAATTACATCAATGGTTCAATATAAATAAATTATCACAAGGAAGGGCTCTTCAA
CACACATTTCCTAGTAGCCAGCCTTTGACACATGTTTAAGTTTCATACAATATGCTTTTAATTGCTTCGGCTTAAACTTG

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G21130.1 Uncharacterized protein protein coding CNT0002095 2612 954 CDS Cis
GLYMA06G21130.2 Uncharacterized protein protein coding CNT0002095 2256 821 CDS Cis
GLYMA06G21130.3 Uncharacterized protein protein coding CNT0002095 2612 954 CDS Cis
GLYMA06G21130.4 Uncharacterized protein protein coding CNT0002095 2256 821 CDS Cis