Detailed information on CNT0002115 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002115

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.9069.2368.81639.0811.2658.5265.1116.65637.97617.31922.32521.84822.15427.00622.34leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02.557.51012.51517.52022.52527.53032.53537.54042.5

Peptides detected in this lncRNA

>peptide 1 (40 aa)
SLLEDRTQHQLAVSATLWARRRVSQVKLKRNHPNLQMPKT*

>peptide 2 (59 aa)
MGFLTSMIKNLTSPMVLITWIVHSALRGSENMIMIMLIVCWQNISLTKTSMEATYLIWK*

>peptide 3 (93 aa)
MVFWGHNYVLRGAIYTIQYTDCKVHHCHPLTYSAFHIHSSCLSTIKKVHDIILSLFLFNYQIFYLFICHVQSFSIYLSFIKFEITLIICLSIF*

>peptide 4 (108 aa)
MASVPSPSSSPPPPPPRSGNTSPNNQLEAVTNNGVSHVDDKKPNFTDGLDHLDSPQCIERFRKYDHDYAHRLLAKYFSNKNFNGGNIFDLEITVNDEIIK
SSRSCSRF*

Sequence

>CNT0002115
GTCATTACTTGAGGACCGAACACAACACCAGTTAGCAGTTAGCGCAACCTTGTGGGCCAGGAGAAGAGTATCACAAGTGAAACTGAAGCGAAATCATCCC
AATTTGCAAATGCCTAAAACCTGAATTTGGAAGAAAGAAGATATAAATAAAATGGCGAGCGTGCCTTCACCTTCTTCTTCTCCTCCTCCTCCTCCTCCAC
GCTCCGGCAACACCTCCCCCAACAACCAGTTGGAAGCTGTTACAAATAATGGGGTTTCTCACGTCGATGATAAAAAACCTAACTTCACCGATGGTCTTGA
TCACTTGGATAGTCCACAGTGCATTGAGAGGTTCAGAAAATATGATCATGATTATGCTCATCGTTTGCTGGCAAAATATTTCTCTAACAAAAACTTCAAT
GGAGGCAACATATTTGATTTGGAAATAACAGTAAATGATGAAATCATAAAGTCAAGCAGATCCTGTAGTAGGTTTTGAAGACCAATCCAGCAATGGATCA
ACTCCACCAGCAGATTCCCAAGCTAACATCCCCAATGGGAAACATGCGGTGAAGAAGAACTGAAATAATGTGCCTTGAGAAGCATCATCAGTGCATGACA
TCTTAGAAAGCTTAACGCAAATTCAGGAACTTGTGACTGAAAAGATGGTCATGGTCTCAACCATCAAATTCCTAGCGTAAAACAGATGGTTTTTTGGGGT
CATAATTACGTGTTAAGAGGCGCTATTTATACGATTCAGTATACTGATTGCAAAGTGCATCATTGCCACCCACTAACTTATTCTGCATTTCACATTCATT
CTAGTTGTTTAAGTACTATAAAGAAAGTCCATGATATAATACTGTCTCTGTTTCTTTTTAATTATCAGATTTTTTATTTATTTATCTGTCATGTACAAAG
TTTTTCTATTTATCTGTCATTTATAAAATTTGAGATCACATTAATTATTTGTTTATCAATATTTTAATTAATTTACAAATA