Detailed information on CNT0002120 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002120

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVCEVYLFVLSFKNYKYFLRQNFLINIFYKSF*

>peptide 2 (30 aa)
MPLVTTMQQRKKEKKTRQSICNWTMVLNCS*

>peptide 3 (36 aa)
MMTFHTLKTMQNCLEFYCNYLHCRIDIPYYNQIIHM*

>peptide 4 (29 aa)
MWPMHGFKLISVSFNKVIEITKSKLDLQS*

>peptide 5 (29 aa)
MKRLTKQSWKSNSKNDYELVKFHPMMTNH*

>peptide 6 (35 aa)
MYHMLLIRYVHALNIYLLHLKFYEYELILIKEFTH*

>peptide 7 (50 aa)
MKNISGDESITKELIGGKQSISIISCNLACFFVMFLLIKTCMLPMEVAQA*

>peptide 8 (39 aa)
MYTKAGPIYVPEEEKKWGRSKLIGKKLSFQQEEKNDGPN*

Sequence

>CNT0002120
TTTTACCTTGAGCTGCTTCCTTTAAACTGGTGCCTAATTGTGTCCAGCTTGTTGAAATCCACTGGGTTCCTTTCCCTGCCATAAGCCCAGAGATAATGTA
AGGAATGACATGACCCAAAAGCATAAAAACGAACCTACGTACCTACAAGGAAGGTTATCAATCAACTATCAAGCAAACTAGTACATCTTATTTAGTTACT
TGGTAATTAATTAATTACTTGCAAATATATGAGACTAGATGATTAATCATAGTTAAGTCTATGATATCTTTGTATGTACCATATGCTACTCATAAGGTAC
GTGCATGCCTTGAATATATATCTTCTCCACCTCAAATTCTATGAATATGAACTAATTCTAATCAAGGAATTTACACACTAGAAAAATACATAGTATAGTA
ATATAAAGCTTGTCAATATAGTTGTCCCTTGCTTAAAACTTATTTGTCTTTTTGTTTTCTTTCTAAATTTTAAGGATATGAATTTAAGTATCACACATTC
ATTACATGTTAACATTTTCTATATATGAAAAATATATCAGGTGATGAGAGTATAACAAAAGAGCTAATAGGAGGAAAACAAAGCATTTCCATAATTTCTT
GCAACTTAGCTTGTTTTTTTGTTATGTTTCTCCTCATCAAAACTTGTATGCTGCCAATGGAAGTAGCTCAAGCTTAATGGTGGCTGTGGATTGAGATGGA
ATACATCTGATGTGGCCAATGCATGGTTTTAAATTAATCAGTGTTAGTTTTAACAAAGTCATAGAAATAACAAAGTCAAAGTTAGATCTTCAGAGTTAAA
ACCTGATAAATAAGAAACAATTAAACTGATCAAATTGTAATTTAAGTAGGAAAAATATTGAAACAAACTAAATATGAGCTCCAATGCAAGACCCTGACTC
GACATAGTCAATAGTAAAACATATATTGACCTGCACAGGAAGTTGAGAATTTCTTTCAAACTCTTGTGACATCTCAGATGCAACAGAGATTATAATATCC
TTCGGTGAACGTTGTCGCCAACTGGTTGCTTGCTTAAAGAATAATCTTGATGTAGTATTAAGCATAAAAACAAGGAGAAAACAACTAATTAACACCTTAG
ATTCAGATAATACACTAACAAACCAAGGAGACAAAAAAAGCTTACCTATATAATTGCATACTGATTGTCAATTGAAGCAATCAAACCGAATTATCTTTTA
GATGGTATGTGAGGTGTACCTTTTTGTTCTCTCTTTCAAGAATTACAAGTATTTTTTGAGACAAAACTTTTTAATAAATATATTCTACAAATCTTTTTAA
TATTTTTTAAAAAAAATTATTAAACAAATATATATTTGTTGTCTTCAAAACTTTTAAAAACATTCAATATAATTATTCAAAATATTTTGCAAATTATTAT
TCAATAATAAAATGAAAACATTAAAACCCAATAATGAATGCTATGAAAATATTTAAGTAAATAAAAAATGCTATGCAAATATTAAAACAAATAATAAATG
CTAATCAATATTAGAAAAGATAGTAAAAGCTATGCAATGTATTAAACCAGATAATAAAAGGATATGTATTAAAATACATTTAATCTTGTGATGTAAGTAG
AGTACTCAACAAACCAGGGGAGGAAGCCAAAAGCAGAGTACTATTGTGATGAAGCCAGAGCTTTATGTATACCAAAGCTGGTCCTATTTATGTACCAGAA
GAAGAAAAAAAATGGGGTAGGTCCAAACTAATAGGAAAAAAACTAAGCTTCCAACAAGAAGAAAAAAATGACGGTCCGAATTAATAGTTGAATTTGAAAT
TTGCAAATGTAAAAGAAAAATGCCAAAAGACCTTAAAAAATTATTGAGGTTCCAAGGCAAATGTAATAATTCAAAAATCTTTAGAAAATGAAAAGGCTGA
CAAAACAATCTTGGAAAAGTAATTCGAAAAACGATTATGAACTTGTCAAATTTCATCCAATGATGACAAATCATTAATTTAAAACTTCCCTCACGACTAG
ATTTCCAACACTAAAACCACTAAGCAAAATAATAGAGGTGATATGCAATCATCCACCACACAAAGTAAGGTATTTAGTCAAGAGCAGTGGAATAAAATTG
TTCTTATTATGGCAACATAACACAGACCCAATTTTAGACCAGCGAAAAGTAAAAATCAATACATACAAGAGAAAATACAATTTCCATGAAGCCCTAAAAC
TTAAAAGTAGCTTTATTTTTTATATAGCAAGTCTTCTACAAAAGGCTAATTGGAGGAACTTCTTTTAAGGAAAAGGGAAACAAAAAAAAAAAAGAAACTG
AGCCAAACATTGCTAGTCTCTCCTACAAAATGTACAACTTAACACTCATCTAAAATTATAAATTTTTTTGCAGCAGCCATAAATTTTCAAGGCTCCAGCT
ACTCATAGGGAAATTACACCAACTAAAACTTGTAGGCAATGAAAATTCATGAAGTAAACTTCTGCAGATTCCACCTCAGTGTATCTTCATTAGTTTGGAC
TTACAATATAGCCCCAACTTTTTAAATAGTTAAAGATTTGTGCATACATGTAATTATTTAATGTTAATTAAGCCTCAACTAACAAACACCACAAGCACGA
GAGTACAATAATGCATTTAAGACTTGCACAAGATGGAACAAAATTAGAAGAAACTAATAAGAGACAGTAAGACATCTATCCCTAACCCTCGTAATCAACT
TTTTTCCCCTCCTAAAACTCTTCCAAGGAGCTTTTGATTATAAGTTTTTTGAAGTACAAAATAATCTAATTCAAACACATACTACAATCAAATGATGACA
TTCCATACCTTGAAGACCATGCAGAATTGTCTTGAATTCTATTGCAACTATCTTCATTGCAGAATTGACATTCCATACTACAATCAAATTATACACATGT
AACACTGCATCCCCCGTTCCATACATAATTACTAAAAAATTAAAACCATACTACTAAGTAGTTTCTAAAAGACGCAATTAATGAGATAACACGATATCCA
TGGTCTAAGGGTGCTCCCAATTACACAAATCAATATAACATGCTAGAATTCACACTCGAGCCTACCTTTGTTCTTCTATGCCTTTAGTGACTACTATGCA
GCAGAGGAAAAAGGAAAAAAAGACCCGACAAAGTATATGTAACTGGACCATGGTTCTAAATTGTAGCTGAAATATTGTTGTTGCAGTGCTGTCCGCAACC
GCAACAATCCGCAATTGCAGTGTGAATTTCAATCACTCAAAATTTCGCAACGCATCTGCTGCCACCTAGCCACAATAGAACTGTATTGGAGCAGCAATTT
AGAACCATGGACTGGACTCATCTCCAAACCAATTGATTTTCAGATGTAAAATAATATTTGTGGCAAATTGAAAGTGTCTATATGTTGAACACATGATATA
AAAC

lncRNA-RNA interactions

Number of interactions: 24

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G02590.3 Uncharacterized protein protein coding CNT0002120 179 134 CDS Trans
GLYMA02G02590.3 Uncharacterized protein protein coding CNT0002120 210 101 CDS Trans
GLYMA02G02590.4 Uncharacterized protein protein coding CNT0002120 179 134 CDS Trans
GLYMA02G02590.4 Uncharacterized protein protein coding CNT0002120 210 101 CDS Trans
GLYMA02G02590.5 Uncharacterized protein protein coding CNT0002120 179 134 CDS Trans
GLYMA02G02590.5 Uncharacterized protein protein coding CNT0002120 210 101 CDS Trans
GLYMA04G09651.1 Uncharacterized protein protein coding CNT0002120 400 274 CDS Trans
GLYMA06G09750.4 Uncharacterized protein protein coding CNT0002120 375 167 CDS Trans
GLYMA06G09750.5 Uncharacterized protein protein coding CNT0002120 375 167 CDS Trans
GLYMA06G09750.6 Uncharacterized protein protein coding CNT0002120 375 167 CDS Trans
GLYMA06G09750.7 Uncharacterized protein protein coding CNT0002120 375 167 CDS Trans
GLYMA06G24300.1 Uncharacterized protein protein coding CNT0002120 880 325 CDS Cis
GLYMA06G24300.1 Uncharacterized protein protein coding CNT0002120 2292 846 CDS_UTR Cis
GLYMA08G40760.2 Uncharacterized protein protein coding CNT0002120 714 382 CDS Trans
GLYMA08G40760.2 Uncharacterized protein protein coding CNT0002120 322 119 CDS Trans
GLYMA13G43110.2 Uncharacterized protein protein coding CNT0002120 299 128 CDS Trans
GLYMA14G02480.4 Uncharacterized protein protein coding CNT0002120 461 190 CDS_UTR Trans
GLYMA15G02260.2 Uncharacterized protein protein coding CNT0002120 218 106 CDS Trans
GLYMA18G16315.1 Uncharacterized protein protein coding CNT0002120 541 386 CDS Trans
GLYMA18G16315.1 Uncharacterized protein protein coding CNT0002120 297 115 CDS Trans
GLYMA18G20671.1 Uncharacterized protein protein coding CNT0002120 864 395 CDS Trans
GLYMA18G20671.1 Uncharacterized protein protein coding CNT0002120 1218 531 UTR3 Trans
GLYMA18G20671.2 Uncharacterized protein protein coding CNT0002120 864 395 CDS Trans
GLYMA18G20671.2 Uncharacterized protein protein coding CNT0002120 1218 531 UTR3 Trans