Detailed information on CNT0002126 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LFV3|CDF3_ARATH, E-value = 1e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002126

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.7431.9231.78600.2081.0441.0210.1910.2130.5120.3710.2030.87500.242leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.922.1

Peptides detected in this lncRNA

>peptide 1 (61 aa)
FSPLPPARFAWFLPQSSTFGTPCRNSVILRLWKVCLGSEYPLGSSLSLQHLEEDQLLSFSH*

Sequence

>CNT0002126
CTTCTCCCCGCTCCCACCGGCACGTTTCGCATGGTTCCTCCCGCAGTCCAGTACCTTTGGCACGCCTTGCAGAAATAGCGTGATTCTTCGTCTATGGAAG
GTGTGTTTGGGTTCTGAATACCCTCTGGGGTCTTCTTTGAGTCTGCAGCATTTGGAGGAGGATCAGCTTCTTTCGTTTTCTCACTAACTTTTTCAGCTCG
GGGATCCTAATAATTTGACACAATGTTTTTCTTAATTAATTAAATGCAAACTTAGGAATAAGAAATTTGTAAGCCCAAATGGAATTATAACTCGAACCAC
AAGATCATGAAGAAGGTTGGAGAAAATTAAACATGCTCAGCTCCATTTTTTGAATTGAAAATTGTGTTGAGTGTATATGTTTCAATTGGGATGGTGAAAA
GTATGTAACTTGAGCAAGTTCAATGAAATCGCAAACTAAAAGTAGTTTGACCCAGTTTCACGATATAAGCATTTATATTCTAGAACACAATATACCCAGA
AGATGAAAAGGAACAATCCAAAGGGTTAAGAAAAGTCTAGATTCAGGATCTGAAGAAGCTAACTTGATAGATTATAAGTGAAAAACGTATTTTTTTTCAG
CCTTAATAAAAGTCTAAAAAAGGAAATTGGAGCTTTGAACTCAGGTGGTAGAATACAAGCAGAAACATTTGACCTGAAGAAT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G33410.2 Uncharacterized protein protein coding CNT0002126 341 180 CDS Trans
GLYMA06G20950.1 Uncharacterized protein protein coding CNT0002126 1020 375 CDS Cis