Detailed information on CNT0002129 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002129

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.2250.4921.25601.1686.9714.3074.0390.60.961.5662.2810.73900.679leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.5

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MECGSKCWNCGGLERPRYMQVESCLKISSTPSQKPCWLILSG*

>peptide 2 (32 aa)
CFSLYNKDHLHFISSFIQLKARTITLVFSLVT*

>peptide 3 (86 aa)
MSSGIRAWSVAASVGIVEALKDQGICRWNHALRSAQHHLKNHVGSFSQANKLSSSAMISTTLKHEKANQSEESLRTVMYLSCWGPN*

Sequence

>CNT0002129
TGTGCTTCTCTCTATATAATAAAGACCACCTTCATTTCATTTCCTCATTCATTCAACTAAAAGCAAGAACAATTACTTTAGTGTTTTCTCTTGTCACATA
AAAGTCATCTAAGAAGAATTACAAGATCATCATCACAATAACAAGATGAGTTCAGGAATTAGAGCATGGAGTGTGGCAGCAAGTGTTGGAATTGTGGAGG
CCTTGAAAGACCAAGGTATATGCAGGTGGAATCATGCCTTAAGATCAGCTCAACACCATCTCAAAAACCATGTTGGCTCATTCTCTCAGGCTAACAAGCT
TTCTTCTTCTGCTATGATCTCCACAACACTAAAACATGAGAAGGCAAATCAATCAGAAGAGTCTTTGAGAACTGTCATGTACTTAAGCTGCTGGGGTCCC
AACTAGATATCATAAGCCCAACAACAAAATATTCTTTTCTCTTTTCAATTCTAGGAATCAAGAATCAAGCAAGCTTAATTAGTCT