Detailed information on CNT0002134 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZV52|EGC2_ARATH, E-value = 2e-16

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002134

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00013.3350000000000.760.307leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MMHLQLLHASLMLKSILNIPRYDLPVIRHNQCICTLLINNIKE*

>peptide 2 (74 aa)
MYTTHKQHQGISCDLLKRSAKQNVIQNRMWNFYVLRLNIQYHDVNKLLMFVQDFASWRQSIHLIKSYLPFNDKF*

>peptide 3 (77 aa)
VAVNEGLWDNGAACGRRYRIRCVSGNNRPCKGGSIDVKVVDSCSRSPCPNTLLMSNDAFAAIARFPHVKINIEYTQI*

Sequence

>CNT0002134
TTGTTGCGGTGAATGAAGGGTTATGGGATAACGGGGCAGCGTGTGGAAGGAGATACAGAATAAGGTGTGTGAGTGGAAACAATAGGCCATGCAAAGGTGG
TAGCATCGATGTTAAAGTGGTAGATTCCTGTTCAAGGTCACCATGTCCCAACACCCTCCTCATGTCAAATGATGCATTTGCAGCTATTGCACGCTTCCCT
CATGTTAAAATCAATATTGAATATACCCAGATATGACTTGCCAGTGATACGTCACAACCAGTGCATATGTACACTACTCATAAACAACATCAAGGAATAA
GCTGTGATTTGTTGAAGAGAAGTGCAAAGCAGAATGTGATCCAAAACAGGATGTGGAATTTTTATGTACTTAGATTGAATATTCAATATCATGACGTTAA
TAAACTGTTGATGTTCGTGCAAGATTTTGCTTCTTGGAGGCAAAGCATCCATCTAATAAAAAGCTATTTACCTTTCAATGATAAATTCTAGAATTACGAT
CAGTGCCCATGTTACTGAAAAACAATGAATTGAAAC