Detailed information on CNT0002139 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9CA89|ROGFC_ARATH, E-value = 2e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002139

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQNGLRHHCCRSKMIRSFSSNIYYVFFGRQILSSICEEEA*

>peptide 2 (39 aa)
MTQSFIHSLNPSLTNPVVSRAAPPSCSLVIVEVHKPLQL*

>peptide 3 (55 aa)
MKKYIWGYSVVWVFLFLMLLTIGVKIYSMNATSALCIGKTKWVKEPIVPYSPFLP*

>peptide 4 (53 aa)
MYHGNHYFPLMHLIWNQHMFIQTLYFICGLTYSYLIEHCRASVSFQFHIICES*

>peptide 5 (42 aa)
MLICQLILTLDVPWQPLFSTNALNMEPTYVHSDFVLHLWVDL*

Sequence

>CNT0002139
GACAACGACGGTTTCCATATAATCGTCTTTGTAGAATAAGAAAATAGAGGCACAATGACAAATGTGTAAATTGCATGTTTTGTACAAAGACAGTTTAAAT
CCAAAAATCGTCTTTGTTTGCTTGCTGATTTTTGGGCCTCAATGACTCAGTCCTTCATTCACTCTCTGAATCCTTCACTCACTAACCCCGTCGTCTCCCG
TGCTGCTCCACCGTCGTGTTCCTTGGTCATCGTCGAAGTGCATAAACCTTTGCAGCTGTGAATGATCCAAAAGAAGTGATTCCGTACATAAGCCCAGCCC
CAATTTAGTAAAAGTTTACCAATTATTCCAACTCACATTATACGAAGTCAGGAAAAACTTCTTTGAAGTTCCAGTTGATCAATGAACGTGCAGATTTCTC
CTTTGCGCTATTTTTAAGGTAGACTGTTAAATGTGCTTCCAAGCTCTTTCAGGTGTTCTAATATTTAATATCTCCTTCTCATTCTAACTAAAGCATGCTC
ATTTGTCAATTGATTCTCACCTTAGATGTACCATGGCAACCATTATTTTCCACTAATGCACTTAATATGGAACCAACATATGTTCATTCAGACTTTGTAC
TTCATTTGTGGGTTGACTTATAGTTATCTGATTGAACACTGCAGAGCTTCTGTCAGTTTCCAATTTCATATCATTTGTGAATCCTAAAGTGCCTCTGTTT
CCACGACTTGCTCAGGGGAAGTCTTGGGATCAAATAAGTTTTTCTTCATGCTTTGAGGTCCTTCATATTTTGGTCACACAATACTATTCATTACTTCTAT
TTCTCCTACTATGCCTTTGCTTGTGATGCAGTTCCTAAATATGAAGCATGTTAACAAGTATCCTATGTAGAGTTAATAATAGAGTTGATGTGGGATTGAA
TTAAAACTTCATACTAAGGATGACTTGCAATAATCTTCTTTAAAACCTCTTCACTTTGTTTGATCTCTACATGACTTCCCTTGTCCCCTTTCTCCCTGAT
CCAATTTCTACAATTTATGTACCTTCCATATCTGTCTAGTTAGCTTTATTATCTTCTGCACCAATTGAATCAGAAAAAGTTGGACACAAAAATATATTAG
GCCAATGTTATTATATATATAGCAACTTATCCAAGAAAAAAAAGGGGTTTGTATTATGGTTATTGACCAACTGGTGTGCAACCTAGCTAAGTGATGAAAC
GTAGTTATGAAGAAGTACATATGGGGTTACTCAGTCGTATGGGTTTTTCTGTTCTTGATGTTGTTAACCATTGGAGTTAAAATATATAGTATGAATGCAA
CAAGTGCATTATGCATTGGAAAAACAAAATGGGTTAAAGAACCCATAGTTCCCTACTCCCCTTTTTTGCCTTGAAAAGAACTTCTGAAGGTTTTGTTGTT
ATGATTGAATAATGTTTTGTGTAAGATGTCTGAATGTTAACAATGATAACTTTTAAGCAAATATAATTCCTTTTGACTTACCTTTGGTAGGGATTCAATA
TAGTTTTCAGAGATCTCCATTTCTGATAGAGTTTGAGCATTTATGGCCATACCTGCTTTAAGAGCTTGGTTCACATTATCTTTCTGATACTGGACAAACC
TTGTTGCTGCATCAGATAATAAGAGTCTAAAGGGAACCTTAGGTGTAGTTATATAACTTTTCTTTTTTGTCTAAATTAGTATATTCTCGCAAGACAATAG
TCGGATAATATCATTGTAAATAGGAAAGCTCTCTCTCTCCAAATTTTAGATAACTTGATTGTAGTATATATTTTTCATAAATGAATGATTAGATAAGCTG
CGACTGGGTGCTTACAGTGACATGAATCTCACATGATCGCAACATGTCCGTGGAGTTTAGCCAAAATCTGTGCACTCCATTAGAAAAGCTGTAGCACTGC
TTGTCCGGAACTTGGAAGTTTGAGTTACTTTAAGGAAGACGGGTGAAACCACCAGCTGTGCCTATGGAGGAAAGAAACAGTGGTCAGACAGATAATCAAT
AGCAAAAGGATTAGATGCAAAATGGGCTGAGGCACCATTGTTGCAGATCAAAGATGATTAGATCTTTCTCCTCGAATATTTACTATGTTTTTTTTGGAAG
GCAAATATTAAGTAGTATCTGCGAGGAAGAGGCTTGATACTAATGATATATGGACAAGATTTTTGTTCATGGTTGGCAAGAATATGGTTGATATTGCAGG

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G09495.1 Uncharacterized protein protein coding CNT0002139 429 431 CDS Trans
GLYMA07G02250.1 Uncharacterized protein protein coding CNT0002139 508 213 CDS Trans
GLYMA07G02250.2 Uncharacterized protein protein coding CNT0002139 508 213 CDS Trans
GLYMA07G02250.3 Uncharacterized protein protein coding CNT0002139 508 213 CDS Trans
GLYMA08G21910.1 Uncharacterized protein protein coding CNT0002139 435 207 CDS Trans
GLYMA08G21910.2 Uncharacterized protein protein coding CNT0002139 435 207 CDS Trans