Detailed information on CNT0002141 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003759, E-value = 4e-06 (V. vinifera)
CNT0031985, E-value = 4e-06 (O. sativa)
CNT0009204, E-value = 4e-06 (S. tuberosum)
CNT0035597, E-value = 4e-06 (C. reinhardtii)

Expression of CNT0002141

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000.0980002.7123.0522.7964.2943.70800leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.75

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDPHLHRIDNSSKIGEFPAVRLLVYIIKVTL*

>peptide 2 (40 aa)
MRKIQGPKSYSVCSCLYDAHSYSSLMKELTYSPDRSQRER*

Sequence

>CNT0002141
ATGGATCCTCATCTTCATAGGATTGATAACTCTTCCAAGATTGGAGAATTTCCAGCTGTAAGGTTACTTGTATATATAATAAAAGTTACCTTATGAAGGC
TTCTTCAAAGTGTCAAGCTTGAAAGGACTATACTAAAAGTGAGTGAGTACTTATGTATTTTTTTTAAAAATTTTTTTGACATGGTTGGATCATTTGATTT
CTCTTCTTCTTTTGAATGAGAAAAATACAAGGACCAAAAAGTTACTCAGTTTGCAGCTGTTTATATGATGCTCACTCATATAGCTCACTCATGAAGGAAT
TAACATACTCTCCCGATCGATCTCAGAGAGAGAGATAAAGATGATATAGACATGCATGCTTCAGCGTCACCAATGCCAAGTCCAAGTCTCTCTAGTTTTC
TGCAATATTAATTTAAGATTAGCATTTGACAGATGAGAGAATGTGAATAGGAATATATTATTATTATTATTATTATTATTATGAATAAATAAATTGGGTA
ATCAATCCCGGCCCGAATGTTCATTTCTCATGGACAAGAAAGGTGAAAGCATGTACAGTGAAAACCTATCAGATGTGAAATTCTTGCTTGCTTGCTTTTA
TCTGCGGTACTCTTAGCCAGCTTTGTCTCTAGGTCTTTGTAGGGTTTCAAACTACAACATCCCTCCCCTATTCTGAAGTCCTTTCAGCTTTTTTTGAATT
AACCCGTTTTCAAACTGGTAATTCAACAGTTACCAAGTGAAATTCTTTGCAGTAAAAAACCTAAAAGTGAAATGGCAGGGATGAGTGAAGGTGGTGAAGG
AGGAAGATGATTTCCTTCCCTTGATGAAATAGAAATAGATAAGAGATGTGCTGGAACAGTTAACGAGAAGAAGTGATGACAAGAGAAGCTAGCTATGGAT
TCTCTCTGTCACTGTGTGAGACTCTCTTTACAGAGAATAGATATTACATGTTTCCATTATGATGAAGAACCAAATATGTGAATGCACAAGCTGATGCAAA
CTAAACAGAGAAAGAGAAAATTTACAATTACACAAGTGCTTTCTTGATGGATACATATATGTATGTGTGAGTTCTGAGATGTGTGTTTTAGTGTAATGTA
TTTATGGGGCTTTTAAAGTTGTTGAAAATTCAGAAACCATCTTTGGGAAAGCTTTGATTCCGTGGAGTCATACAGTAGAAGAGATTTTGAAATTGGAAAT
GCAAAAGAAACAAGAGAGAGAGAGTAGTAAAATAAATGACGACTATCTGACGAATCTTGGGAAATGAAACAGAGACAGAGCTACCCGGGGAACGATTCAT
CGCCGAGCAAGCCAACTTGGTCTCTGTCTCTTTAAAGAGGGGAAACTACTGCCAACTCCTTTATTGCTCACATTTTCATCATCAATTTATTATCACCACT
GCCCACCTAGGATTACAGAATTTTTTTTCAAACACAAATTTCTCCTCAA