Detailed information on CNT0002145 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LS40|ASPG1_ARATH, E-value = 4e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002145

Peptides detected in this lncRNA

>peptide 1 (50 aa)
IQIARLSFPFLFSLRLSFVLDTLSVGFPPYSIHSLLSIKNPHTYTRRKRC*

>peptide 2 (30 aa)
MFGFQPCKAEEVLARKQVGSSDHSSLCCYK*

>peptide 3 (64 aa)
PNRALKFPFSFFSPALFCTRYIVCWFSSLLNTLIAINQKPSHIHTKETLLTHNYKEGNAVDSQL*

>peptide 4 (30 aa)
MFRRCSNKHVYEILSSAKRGSKLQGCDDVT*

>peptide 5 (68 aa)
MSMKYSPLPREAPNSKVAMMLPENSSLEDSNDATKALAMLFCCWMVILSFTSCFLDMLFVFIFSMTFL*

Sequence

>CNT0002145
ATCCAAATCGCGCGCTTAAGTTTCCCTTTTCTTTTTTCTCTCCGGCTCTCTTTTGTACTCGATACATTGTCTGTTGGTTTTCCTCCCTACTCAATACACT
CATTGCTATCAATCAAAAACCCTCACACATACACACGAAGGAAACGCTGTTGACTCACAATTATAAAGAAGGAAACGCTGTTGACTCACAATTATAAAGA
AGGAAACGCTGTGCTCTCAGTGCTCGTTGGCTCACCTCGGCGTGTCCTAAACGTGCCTCTTAGATTATAGAGAAGGAATCGCCGCTCCCTACACTCATTG
CCCTTGCCCTCACGTTCTCAATTCGTCTCTTATCCCAAACGAAGGAAGGACATGTTTGGATTTCAACCTTGCAAGGCTGAAGAAGTTCTGGCGAGGAAAC
AAGTTGGCAGCAGCGATCATAGCAGCTTATGTTGCTATAAGTAATAGAGTCCTTGGGACTATAATAGGGTCCATTTTGTTCAAAACAATCATAACAAGGA
TCACGTTGAATCCAACTGAGGTCACTGCCAGTGTCAAGTATCAACCAAACATGTTTAGGAGGTGTTCCAACAAACATGTCTATGAAATACTCTCCTCTGC
CAAGAGAGGCTCCAAACTCCAAGGTTGCGATGATGTTACCTGAAAACTCATCTTTAGAAGATTCCAATGATGCTACAAAAGCATTAGCTATGTTGTTCTG
CTGCTGGATGGTGATACTCTCCTTCACTTCTTGCTTCCTTGACATGCTGTTTGTGTTCATTTTCTCTATGACTTTTCTATGAAGAGTTTGAATTCTGACC
AAATCCCTGATTGCTGAGTCTAGTACATTAGTTTTAGGCTCATTCCCATGATTCATTGCCCTGTGCCTTAGGTGTAACTTTGCTGATATAACACCATCTT
CATCTTCTTCCTTATTTAATCCGGTTGATTTTGAACTCTTGGCTTTCCTGTAAAATTCTTTGTTGGTGAGGGTTGGATCATTATTGTGATCATTTTGAGC
ACCCACTTCACCGTATGCTTTGAAAGTGGCAGAAAAAATTGAAAGGAGGACCAAAACAAGGGAAACTTTCAT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G42050.2 Uncharacterized protein protein coding CNT0002145 333 287 CDS Trans