Detailed information on CNT0002147 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002147

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.722.0451.82800.0610.0760.060.1120.3741.6470.761.1860.6140.6990.141leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.2

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MFSQRQLYESVSVIPLKWIEQLTPVAYTFVED*

>peptide 2 (81 aa)
MKQHSIHLSCPKLENYAKKHTRIVSEYCTISLPERQKFITEKLIHMIISARGFTEQKAYNYVTLMGQQFLAYYPISMPCMA*

Sequence

>CNT0002147
CTTTCCTATATTATAGCCCTGCAGTAAGTCATTTACTACACCACATTCAGCAGCAGAGATATAGACAAATCTTTTAACACCTGTGGGACCAAGGACAAAT
CATCCAACAATAAGTGCCAAAGAACTCTACAGGAGGAAACAATAACAAATACATCGCTGGACAACAAAATCAATTCCATTTTTTTTTTAAAAAAAAAAAA
AATCTTGTAAACTGATGAACAGAAAATAGTTTCCAATAAATCAACTCACTGGCTAAATATCACCCTCAATAATTTAGAATAGGAGACAAAATAAATTCAT
GTTAGAATTCATTCACCAAAACACCAGTTTCTGTCATTAGACTCGTTCCATTTTCCACAACAAATAAATATATAGACATATTGGCAAAGGAAAAGCATAA
CAGAGACAAGACAACTGCCCTATTAGGTCTACAATTACATGAAATGAAGCAACATTCTATACACCTATCATGTCCCAAATTGGAAAACTATGCCAAAAAA
CATACAAGAATAGTATCTGAATATTGCACTATTTCTTTGCCAGAGAGACAGAAATTTATAACTGAAAAGCTCATACACATGATAATAAGTGCTAGAGGCT
TCACAGAACAGAAAGCTTATAATTATGTTACACTAATGGGACAACAATTTCTAGCATATTATCCTATTTCAATGCCTTGTATGGCTTGACAACAGTCTTC
CTCATTTGACAAGTTAAAACCAAGTATAGCAAGTCCATAAACATATAAAAACTAAACCTGAAGTTGTGGCCTGAATTGCTACACCAACTCTTTCTTATAA
TAAGGTGGACAATTGTGACAGGCTGACAGCAACCTAAGAAAACTTCTTTTCCCCCACTGACAGTACCATCCATCCTTTTCCCATCATTCCTCTTAGCCAC
TGTTAGTTTATTTCTTATAATTTGTAGTAACTTTTGATTAAAGTTTTTAAAACCAGACCAGACCGACCAGTTCAACCGGGGTCCAGAGACTCTAAAAAAC
TGGAACATCTCTGAACCGGTGGGAACCGGTATAGAAAACTAGGGTTGAACCGGTCTTTTTAAGATAAATACAAATACATTCCTAAATATTTCACATAAGT
ATCAAATATTTTCTCAATTATTATTATTTTTTATCTTATGAAACATATAATTTAATCATTTATACTAATTTATAATTTTTTAGATCCTAAATTTTTAATT
ATATATTACTTGATTACTTCAAATATTATATAATATTGAAAAATATAAAACCGGTTCAACCACAGTTTAACTACAGTCGAACCATCGAACCTTAAACCAA
TGCCTTCACCAGTTCAATCACTGGTTCAGTTTTAAAAACATTGCTTTTAATAGATTAATTGTCCTGTGTCAATCATTAGACAACAGGAGATATATTTTAG
TTTAGGACAGCATTGACTCCTTTCATTACTTTTTCTCGGGGGTTCTCAAAATTATCCAGATAGAAGATTTGTGCTGTATTTGTACTTCTATGGCTATAAC
TACCTCATGACTGTATCTGGACAGGGGTGGCTAGAAATCTATCAGGGGAAAAACAGACTTGTTGCTCTGCAAGCTCTTACACTGCAATACTGACACAGAT
AAGGATATATTGAGCTGATATATTGACTCAGGTAAATAATAATCCCAAAAAATTAACAAGTTTTCAGTATGAGTTTACAATTTTGGCACTTCCATTTGAA
AATTTTTGGGAGTATAGAATGCTTTTGGTAAGAAAATGTTTTCTCAAAGACAACTGTATGAATCTGTATCTGTGATTCCCCTAAAGTGGATTGAACAGTT
AACCCCTGTCGCCTATACGTTTGTGGAAGACTAAATTATATTAATGCTGCATATAACAGTCTCCTAGACTGGTATTAGTGGAGAACTTGTGAATTCCAAC
ACCATCAAGTATCAAGATGTTGTGATTTCAACAAGCCTAACATTAGCATGGAAATTTGTATTTTTTTTAATCTTTAAAAGGGATTATATATTTCAGTCAA
AATTAAGCTGTCAGTCAATTGAACAATTTTTTTTCCAAATTTTTGTTAAGCCTAGTCTTATCATTTGATCTATTCAACAAATCCCACTTGGTGGAATAAG
GCTCAGTTGCAGTTGTTATAAGCTCAAAAAGAAAGATTAGTATGGGCAATGCCCTGGCTACTCCAAGCAGTAGAACTAAAAAATAATGATGGTGACATTT
GAAAAATTGGATTCAAAAGAATATGTATGAAATGTGAATTCCTCAATTACCTTGATCTGAAGCTGCTCTAATAGCATTGATGTTGGAGCCAAAACCACTC
ATAAATGAGATCTTATAAAAGAAACACAAGTT

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA0404S00200.1 Uncharacterized protein protein coding CNT0002147 817 332 CDS Trans
GLYMA0404S00200.1 Uncharacterized protein protein coding CNT0002147 773 331 CDS Trans
GLYMA04G06210.1 Uncharacterized protein protein coding CNT0002147 108 51 CDS Trans
GLYMA04G06210.1 Uncharacterized protein protein coding CNT0002147 384 241 CDS Trans
GLYMA04G06210.1 Uncharacterized protein protein coding CNT0002147 480 333 CDS Trans
GLYMA06G06200.1 Uncharacterized protein protein coding CNT0002147 808 332 CDS Cis
GLYMA06G06200.1 Uncharacterized protein protein coding CNT0002147 699 331 CDS Cis
GLYMA06G06231.1 Uncharacterized protein protein coding CNT0002147 733 335 UTR5 Cis
GLYMA06G06231.1 Uncharacterized protein protein coding CNT0002147 808 332 UTR5 Cis
GLYMA06G06250.1 Uncharacterized protein protein coding CNT0002147 884 332 CDS Cis
GLYMA06G06250.1 Uncharacterized protein protein coding CNT0002147 777 330 CDS Cis
GLYMA06G06280.2 Uncharacterized protein protein coding CNT0002147 116 51 CDS Trans
GLYMA06G06280.2 Uncharacterized protein protein coding CNT0002147 695 286 CDS Trans
GLYMA06G06280.2 Uncharacterized protein protein coding CNT0002147 773 331 CDS Trans