Detailed information on CNT0002148 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P51425|RL39_MAIZE, E-value = 2e-31

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003895, E-value = 3e-41 (V. vinifera)
CNT0033164, E-value = 6e-18 (P. patens)
CNT0023525, E-value = 2e-14 (A. trichopoda)
CNT0012748, E-value = 6e-21 (S. tuberosum)

Expression of CNT0002148

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)51.77463.47752.469593.52327.9062.6965.1255.654148.99166.246184.411166.41197.728501.09538.555leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)050100150200250300350400450500550600650

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*

Sequence

>CNT0002148
ATAAAACCCACTAAAAGAAGGAGAGTTAGTGCACCTCCGTAGGGTTTGGTTATTAGGGTTTTCGCTCACCCGTGTGCAGTCGAGCCTCCCGAAGAAAAAG
CGAAAATGCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCCTACTGGATCCGCATGAGGACCGA
CAACACCATCAGGTACAACGCGAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGAGGTGCTTGCTTTGCCTCGATTCAGTTTATCCAATTAATT
AGTGTTTTATTTTCTTGAGCCAAAAACAATGCTTTGGAGTTTTTAATATTTTGCATTTTATTCCAAGACTATATTGTGTAAGGAATTTATTGTAGTACGT
TTGACGTGGGTCTATTTGCAATTTCGAGTATTTGGCAAAACCAATCTGTTTTGGCAGAGCAT