Detailed information on CNT0002154 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6AWW5|Y5262_ARATH, E-value = 3e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002154

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MECSHHSLSGLYVDDQCCNFLVGILPHYLFHSLPQCEECFDPFD*

Sequence

>CNT0002154
CAAGTTATTAAAACATAGGATTCAATATCGTTACATCTCATTTTATTTAATTAAATTTTATCTTTTCTATCCATAGAAACATGTTAATCTACTTATAATG
AAGTCAAGATGAAGCACATACCTCTCTTCCACGTAACATTGGATGTTCAAAGGTCTTACTGATATCACCAGCCGTTAAACCGTCTTCATTCGTGAGATTC
AGATCAGTCCTCTTATCCTCTGTGATCAAGCTGATAACTTGCTGAAATAAATTTTTGGAAGCCAAATGCAATGGAGTGTTCCCATCATAGTCTTTCTGGT
TTATATGTAGATGACCAGTGTTGCAATTTCCTAGTAGGTATTCTACCACATTATCTCTTCCATTCTTTGCCGCAATGTGAAGAATGTTTTGACCCTTTTG
ATTGAGGAGAACATAAGGATTAATGGGCCATCCGGATCCAGGTTCAAAGAATTCTTTTACCATCTCAACACAACCCCTTTTGCAAGCAAGATGAACGGGA
AGATGGCCCTTCTTGTTTCGTTCCAAGGCAGTTTGATCCAATTTATTTAGCAAAGAATTTTTAAATAAAATACGAAATCCGTCAACATAACCAATGTCAA
CTGCATAATGAAGGGGAGTATTTCCGTCTTCATCCCTTAAATAAACTAGCTCGGGCCTTATTTCTATTATCGCTTGTATCATAACTACAATAGAACAAAT
CA

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G44830.2 Uncharacterized protein protein coding CNT0002154 1679 702 CDS Trans
GLYMA06G44870.1 Uncharacterized protein protein coding CNT0002154 1908 702 CDS Cis
GLYMA06G44870.2 Uncharacterized protein protein coding CNT0002154 1908 702 CDS Cis
GLYMA06G44880.2 Uncharacterized protein protein coding CNT0002154 1382 711 CDS Trans