Detailed information on CNT0002162 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002162

Peptides detected in this lncRNA

>peptide 1 (29 aa)
YSSGLSCSYSNCLLYSLSKSCNLVCEKTY*

>peptide 2 (48 aa)
MKKWEMGRGAKTSDEERMDKRELAFGKKGEWRRPINSIILLESKTHFIK

>peptide 3 (33 aa)
MRQKTKAREELYLENLEKIKKTCLQIKLTSLTK*

Sequence

>CNT0002162
ATATTCTTCAGGTCTTTCTTGTAGCTACAGTAATTGCCTCCTCTATAGCTTGAGCAAAAGTTGCAATCTTGTATGTGAAAAAACCTACTAGCATTGGTAT
CAATTCTAAGTGCATAGATCCAAATTCTGGAACCAGAATCCTGTAAGAAAAGACAGGGTTTGACCATTATTCTAGGAAACTAAAAGAGAAAGAAGTGCCA
TTAGACCTAGAAGTCATTGGCATAGATGGCATCCAATCAATAATACATCACTCAAACATCAATGTATTTGGATATCTTGTCTAAACATTATATCATTAAT
ATATATCTGTGTGTATAAAACCTAATCAAAATGTTTGGGAAAGGTTATTTTGTAGGATATAATCCCTTTTTTTCAAAAGTTTCCTCAGTAAGTTGGTAAA
AATGAAAAGAAAGATTGTTTCTCTAAATTAATTTAAATCAAATATGAGACAAAAAACAAAAGCAAGAGAAGAGCTATACCTGGAAAACCTAGAAAAGATC
AAGAAAACTTGTTTGCAAATTAAATTAACTTCGTTGACAAAATAATAATTGTTGCAATAACATATCAAATGAGAACTTACGCATTCCAGCGGTTATAGAC
CATGACCAAAACAACAGGAACCAGTAATCTTGGCTGCCCAATTGCTCCCCTGCAAGTAAAATATCCAAAAAAAGCAAGGTGAAAAAAAATAAAACAAAAT
AGAACATGGTTACACCTTTTTAAATAAAAAAAGAGGAACAAACTCTTTGTCATCCAATTCCCACCTAGTAGGCATACCATGTGGAAATGTGGAAGACATC
ACTATACTTAAACAACATGATTGTACATATGAACCTTGGTTAAACTTCTACCTTTCTTTCTTTTACCACCATATTGCAATATGGAAGCTATAGGTATAAA
CTCAAACATGGATATCAATGGACATTGTTAGACTTATCAAATAGTTGGGGTCCTAATAAGACTCGTGTTTATCTACTAAAGAAACTAAATGATGAATAAT
ATCTATCATCTATATAGATTACTTGACAAATCCCTTTGCACCATCAGTCCTTAGCGAGTCCACGCTACTTCCCAGCATACGAATATACGCCAAAGAACCA
AGAAAGCCAGCACCAAAGCTGAATACATGAAAGAAAAGCATACATTAAGTAAAATGATTAAACCTTACAACTTTCTTCTGATCTACTAGATGTTATGGAA
TATTAGCATTTAACCAATATTTCTATCTTACAAATCAGTAATTTAGATTTTACGAATGATAATTAACAATTATCATAACAGAGGAATTTATACAATATAT
CTCGCAATGGTAACTTGACAATAATTATACCCTAGAATATTTTACTTTTAACCATCTTAGTTCATTGGTGCCTGTTCTGAGCAAGGAGATATAAAATGAA
AAAATGGGAAATGGGGAGGGGGGCAAAGACCTCAGATGAGGAGAGAATGGACAAACGTGAGTTAGCTTTTGGTAAGAAAGGGGAATGGAGAAGACCTATT
AACTCAATTATTCTTCTTGAGAGTAAAACCCATTTTATTAAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G43060.1 Uncharacterized protein protein coding CNT0002162 3608 1368 CDS_UTR Cis