Detailed information on CNT0002163 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002163

Peptides detected in this lncRNA

>peptide 1 (49 aa)
QLLILFLNAGNANILISLSCPSILFLSQSLCFSTKPKSSKTSINIVDIS*

>peptide 2 (36 aa)
STPHFVSKCRECKYLNIPFLSLHTVSITKPLFLDQT*

Sequence

>CNT0002163
TCAACTCCTCATTTTGTTTCTAAATGCAGGGAATGCAAATATCTTAATATCCCTTTCCTGTCCCTCCATACTGTTTCTATCACAAAGCCTTTGTTTCTCG
ACCAAACCTAAATCCTCAAAGACATCAATAAATATTGTTGACATTTCGTAGTTTAAAAGGAGAAATGTTTTAATAATATACATATGAAGTGAGTTCCCAG
TTGAATGTTTAAACCCACATTAGTTAAACTGATCTAGAACAATGTCATATCCCAAGTGCCGAGAATTTCAGTTTATATCTCTTTTTGGAGAATGTTTACT
GGATAGTGGTTGTACATTAAGCTGATTTTTAGCTCCAAATTCAACCATTTTGCCAGCATAGATGCAAAATTGAAGACCACCAATTCAGAATAACTATCTC
AATAGGTACATGAAGAATTCAAATACCTAGCTGCAATCTCAGGGGAATAAGAAACATAAGCTGAAACCAGACCAACACCACCTATACCCAAGGTAAAGAT
TTGCAACTTCCTCTTTAACTGAACAGAAAAACCGAAATAAGTTTAGGAGCATAGTTAACAAAAATTGTTATTTGATCAATGCCACAATGGAGGGTATTAT
TCATATGACTTCTAACAAGGAAGAAAAAATAACCAGACAATGGTGCTTAGTACCTTATTATACTG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G43060.1 Uncharacterized protein protein coding CNT0002163 1316 489 CDS Cis
GLYMA12G15186.1 Uncharacterized protein protein coding CNT0002163 707 330 UTR3 Trans