Detailed information on CNT0002167 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0010524, E-value = 2e-06 (S. tuberosum)

Expression of CNT0002167

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MHIYIYIFQRTEFKHLNPIISSYQQKEPLVHSTKSSDFMKILLATNITLETKGI*

Sequence

>CNT0002167
GACCAAAATGATTATTGATTTTTATAGTTGTTAAAAAACTTTCACCACATGAACAATACTTATACCATGTTACCATATACACTTCATTCTCACTAAACTC
AACCCTGCAAGCAGTTGCTTAATTGTCTTACTATAAATGTAAGAGGACAGATTACAAGTATATATTTTTGTCATTGAATGAGAGGTAATTACACACAAGT
TTTTGGTGAAGACAGGTTTGTGCGAATATAGTGAGTATATACTAATTCCTAAATCTCACACACACACACATGCATATATATATATATATATTTCAAAGGA
CTGAGTTTAAGCATCTCAACCCCATAATTTCCTCCTATCAACAAAAGGAACCTTTAGTACATTCTACTAAGAGTAGTGACTTCATGAAAATATTACTTGC
CACCAACATTACTCTTGAAACCAAAGGGATATGAGGAGTTGACTTATTCCTCCACTTTATCTTCAGCACAAGGCTTCTATTACAGGGAGTTATTTGAACT
TTGATCTTCCTTTGTGCTGCTCAATTTATTATTATTATTATTATTACTATTCTCAACTGATGCATTTGATAAGCCTGGCTGCTGAGTGATTTTGCTTTCA
GTTTCCTTTCCACTTGACCCTCCTCCCATGGTGTCCATGGCAAGCTGGCCAGAATAAAGAAATAAACCGACAGAATTGATGCCGTAGACAAATGTAGCAA
GGTAGCACAGGCCATTTATTATTGTCCTGTGAAAAAATATCAAATGATTGTTAGATGACTAATAAAATTAAACCATAAGGCATCCAAGAGAGATATGTTA
TAGAAGCTCCCTTATGGTGATTGTTATCTGGCGGAC

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G35550.1 Uncharacterized protein protein coding CNT0002167 980 357 CDS_UTR Cis
GLYMA12G18563.1 Uncharacterized protein protein coding CNT0002167 759 357 CDS Trans
GLYMA13G34830.2 Uncharacterized protein protein coding CNT0002167 233 206 CDS Trans