Detailed information on CNT0002172 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002172

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.3511.5691.8323.6640.2660.3341.0470.2452.7351.9693.5693.1190.6735.3632.168leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (65 aa)
PFSLQPPNRSYISYLTSCLVCLRDSMPTSHDLAYQRHQRVKSTKSFTEYTYMVSSYMLIKELSNL*

>peptide 2 (58 aa)
LHSPFNHQTDLIFLTSQVVWYALEILCQQVTISHINAIKESKVQSLLLNTLTWYQVTC*

Sequence

>CNT0002172
CTCCATTCTCCCTTCAACCACCAAACCGATCTTATATTTCTTACCTCACAAGTTGTTTGGTATGCCTTAGAGATTCTATGCCAACAAGTCACGATCTCGC
ATATCAACGCCATCAAAGAGTCAAAAGTACAAAGTCTTTTACTGAATACACTTACATGGTATCAAGTTACATGCTGATCAAAGAGTTGAGCAATCTATAA
AGAATACTGATATTTGTATATCCAAAAATGTACATCCGGCATCCATTTAGGAAATGTGGTATAATTACTTTTGAAATCAATCTGTTGATCAAATAATTAC
TTTTACAATGATATTCACCGTTTGTATAATTATAAACGTTAATTTTGATCTTCACCGTTTGTATTCTAAACGAATATAGTCATACATAATTCCTATTAAA
GGACTAGTGTCTCTTGTTTGTGTTAGAAAGATGGTATTGTTCCCCTGCACAAGAAGAGTGCCTTGTACATCAATGCTGAATAGCCAGTAGAGACCGTGAA
TTCCATGTCTAGCTATAGTATTCTCCTTTCCA