Detailed information on CNT0002173 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002173

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)27.43327.71546.20505.35811.48111.30912.2030000.1540.13300leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02.557.51012.51517.52022.52527.53032.53537.54042.54547.550

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNEAISKSWKKVCLLEAKQTEGGFHVGGVSN*

>peptide 2 (41 aa)
MLKTLTRDGRRMMKNLYIAGSLLDMQHLPHIINCSSNDRVD*

>peptide 3 (44 aa)
MVTMKEHGLTKCLSQIARTLMILSYFKNNSSILCKEKEGMNELD*

>peptide 4 (84 aa)
MEKSLSPRSKTNGGWFSCWGRLKLKLPWSKRTSTYKPIGGFNYDPLSYAQNFDEGWEEDDEESLHRGFSARYAAPSSHNKLLKQ*

>peptide 5 (30 aa)
MNWIRTPKHMPTIFGLNTFYIVNPFNHCLC*

>peptide 6 (36 aa)
MQGGNFLENIYGHNERAWANKMLKSNSKNINDFELL*

Sequence

>CNT0002173
TTTGAGAATAAGATAACACCCCCACAAGGCACAAACACTACAAGCTAGACTAAAGTTTCGTTCCATGAATGAAGCTATCTCGAAGTCATGGAAAAAAGTT
TGTCTCCTAGAAGCAAAACAAACGGAGGGTGGTTTTCATGTTGGGGGCGTCTCAAATTGAAGCTTCCATGGTCGAAGAGAACAAGCACTTATAAACCCAT
TGGTGGTTTTAACTATGACCCTTTAAGCTATGCTCAAAACTTTGACGAGGGATGGGAGGAGGATGATGAAGAATCTTTACATCGCGGGTTCTCTGCTAGA
TATGCAGCACCTTCCTCACATAATAAATTGCTCAAGCAATGATAGGGTTGATTGAAGCTTCATTTAAGGCACCTCGAGATGAACAATTCCTTGTTTGACT
AAAATAATCTCAAGAGTCCAGAGATTTACTCCAGTTCTTTGTTGATTCAAGCCTCCACTTGTTGCACCATAATATCTTACCTGAAGATAATAAGTTAATA
ATAGAAAGTGAAAAATATGTCTACATAACATTTTTTTTAATCTATTCCTTGATTAGCTAATGCAAGGTGGCAACTTCTTGGAAAACATTTATGGTCACAA
TGAAAGAGCATGGGCTAACAAAATGCTTAAGTCAAATAGCAAGAACATTAATGATTTTGAGTTACTTTAAAAACAATTCTTCAATTTTATGCAAAGAAAA
AGAAGGAATGAATGAATTGGATTAGAACTCCTAAACACATGCCTACCATATTTGGCCTTAATACATTCTATATAGTTAACCCCTTTAACCATTGCCTTTG
CTAGTCTTTCTACATGCCCATGCATTATGCAGTACCTGTCAAAGTAATTTCACTTTGTAAATTAAGCTCATAGAAACTTGTTGAGTAATTCAATTGATA

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G02010.1 Uncharacterized protein protein coding CNT0002173 193 83 CDS Trans
GLYMA06G02110.2 Uncharacterized protein protein coding CNT0002173 167 81 CDS Trans
GLYMA06G09715.1 Uncharacterized protein protein coding CNT0002173 956 364 UTR3 Cis