Detailed information on CNT0002180 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q2QNK7|S40A2_ORYSJ, E-value = 3e-24

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002180

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.3261.0460000000000000.723leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.1

Peptides detected in this lncRNA

>peptide 1 (36 aa)
KIESWECTKCHRVSKSTKSRFTFPLPQKWYRSQHEA*

>peptide 2 (49 aa)
MIEALRLKLGQEMTMEAPRKNDSLFDRCSSEIGKLTTCYDDFTFFMLVA*

>peptide 3 (28 aa)
MGFFTKVAIIVGCPLVGKLMDHFPRLSVY

>peptide 4 (69 aa)
QKSKAGNARNAIESQKAPRAVSPSRFPKNGTGHNMKPENCQRPMDDRSFEAKTWPRNDHGGTSEKRFFI*

Sequence

>CNT0002180
CAAAAATCGAAAGCTGGGAATGCACGAAATGCCATAGAGTCTCAAAAAGCACCAAGAGCCGTTTCACCTTCCCGCTTCCCCAAAAATGGTACCGGTCACA
ACATGAAGCCTGAAAATTGTCAAAGACCCATGGATGATAGAAGCTTTGAGGCTAAAACTTGGCCAAGAAATGACCATGGAGGCACCTCGGAAAAACGATT
CTTTATTTGACAGGTGTAGCTCTGAAATTGGGAAATTAACAACTTGTTATGATGATTTCACGTTTTTTATGCTAGTTGCTTAACTGCAAATGTAGTGGAG
CGGCTTTGGAATTTTGCTTGGCCTTCTGCCATTGCCTTCATTCATCCAAGCCTTTTGCCAGTTGTTGTGATGGGTTTCTTCACCAAAGTGGCTATAATTG
TTGGTTGTCCCTTGGTTGGCAAACTTATGGACCATTTTCCAAGACTGTCTGTATAT