Detailed information on CNT0002181 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FIJ2|NDUA2_ARATH, E-value = 1e-26

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002181

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)15.12816.35517.62628.55413.05910.87116.7196.57918.09318.70929.44426.08425.59860.28531.083leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)05101520253035404550556065

Peptides detected in this lncRNA

>peptide 1 (48 aa)
EFHPYSKIKNIEKTKVPKRKYRIIRNGLEHLNGPTKLTQEGWAWMDFA*

>peptide 2 (47 aa)
MFYGLWFQPVSASYIISSMTLFIVSSKPWFFMLSTLVEGDLFRPKII*

>peptide 3 (32 aa)
MIWVLRKASNWKACPKHRSLRHLKICQKQDSL*

Sequence

>CNT0002181
GGAATTTCATCCTTACTCCAAAATTAAGAACATAGAAAAAACAAAAGTCCCAAAGAGAAAATATAGGATAATTAGGAATGGACTTGAACATTTAAACGGG
CCCACTAAGCTGACCCAAGAAGGTTGGGCTTGGATGGACTTTGCGTGACATCCATTCCACCCCACTGAGCTTCGATTCCTATCAGTTTTACTCATCTCCG
TTCTTTACCTTCCTGAACGACACCGAGACCAGACACGGTTTGGGGCACAGTTAAGGGCTTTTGTGGAGAGGAATTATAAGGAACTAAAGACATTGAACCC
AAAATTGCCAATATTAATTCGTGAGTGCAGTGGAGTTGAACCTCAATTATGGGCAAGATATGATTTGGGTGTTGAGAAAGGCATCAAATTGGAAGGCTTG
TCCGAAGCACAGATCTTTAAGGCACTTGAAGATTTGTCAAAAGCAGGACAGTCTTTGAAAGCTTGATATTGCTGCTTATGCACTGTCTTAAGTGGAATAA
ATGCTCTCTTGCTGCCCTTGTTATTGCAAATTGCTTTTTGATTTAAAATAAGCCAGGCCTTTTTTTTTCTATGTTCTATGGCCTCTGGTTTCAGCCTGTC
TCTGCATCTTACATCATTTCAAGTATGACACTGTTCATTGTAAGTTCAAAACCCTGGTTTTTCATGTTGAGCACACTTGTCGAGGGAGATTTATTCAGAC
CAAAGATTATATGACTACTGGTCTATGTCAAAGGTTGACTTGCCAGAGAACATGATTCTGTATTGGCTGTGTAACTAAAACCAAAGCATAAACCCATCTA
TGATGTTTTCTCCTAAAGTAGTAGACCATTTTATGTTGCTGGAATGGTTTCTTTCCCTGTTCCTGTATTATGTGTCCATGATCTAATATATATATATATA
AAGGCTTAGTTGCATTTTTGGCACCCATCTCTT