Detailed information on CNT0002182 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q7XT34|TPP5_ORYSJ, E-value = 2e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002182

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.7712.71.7421.5494.393.3944.984.04713.18218.44815.54114.99811.6713.4011.375leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01234567891011121314151617181920

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTFTYTLYIVGKTYSDRQLAIIIHPSKLTEETSMGQSLSYI*

Sequence

>CNT0002182
TGAAGATTAAATTATTTTCATGTTGTAAGTTACTTTTAAAAGCTATTGAAATAAAAAGAAATTCAACAGTTTATTGAAATAAAGCTAAAAACACATTATG
GACATATCATAAGTCATGAGCTTTCTCAAATACTTACATAAGTATGTATGTCATAAGATAAGTTGTAAATAAAATCTTCCAAATGCACTAATTTCAATGG
TTTGCTGTTGTGTTTTCTCAGTACATTGAAGGTCCAACTTTCTGACACCACCCTGGGAACTAGAAGTCCCATCAGCTTTATCACCCTTCAGCTCTGAACA
CCTTTGAACAGATAGTATATAGTGCCAAAGGAAAGCAAATTGTAGTTTTTCTTGACTACGATGGACTCTCTCTCTAATTGTTACAGATCCAGATAAGGCT
TTCATGACTAGAAAGATGAAAGCCACACTAAAGGGTATATCAAGACATTTTCCCACAACAATCGTGACCGGAAGGGAGCATAGTTAGAAGATTTATTATT
ATTATTATTATATGATTTTTACCTACAGTTGAAGATGATATGTACATATTAAAGACTTTTACCTACCGTTAGGAGATGTAAGTAGAAGTTAATGACTTTT
ACCTACACACTATACATAGTAGGTAAAACCTATAGTGACAGACAATTAGCCATCATTATACACCCCTCAAAGTTGACAGAAGAAACGTCTATGGGACAAA
GTCTATCATACATTTAACTACGGATTTTTTATTTATAGTGACAGTTTTTGTCTGTAGATATAGGTCATTTTTCTTGTAGTGAAAATATTTCTTAATCCCC
TTTTTGGGAGACCTTGCATCCTAACATGGAAGATTCACT