Detailed information on CNT0002193 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P44836|HGP3_HAEIN, E-value = 3e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002193

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.2531.2191.868000000000000.281leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.92

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDKQIERESGLHHRLQQEGSCPSQWSKQMVYAP*

>peptide 2 (34 aa)
MFISDPRAHLHCAFNLYEATLEKLISEVSIKDRS*

>peptide 3 (44 aa)
VSYKNSFSFSSSSLRYYVLLTQAVIEVRCLGTWLHKFPFVTGAI*

Sequence

>CNT0002193
GTTTCGTACAAAAACTCTTTCTCCTTTTCTTCCTCATCCCTGAGATACTATGTCCTCCTCACTCAAGCTGTCATTGAGGTTCGTTGTTTAGGTACGTGGC
TCCACAAGTTCCCATTCGTGACTGGCGCGATTTAGGTTTTTGACATAGTCTTGGTTCCTAGTTGGTGGGTTCGTGAGTTGGTGAGTTGGTGGGTTCGTGA
GTTGGTGAGTTGCTAGGTTCGCGAGTTGGTGAGTTGCTGGGTTCACGAGTTCCTGAGTTGGTGGGTTCGTGAATTGGTGGGTTCTCGGGCTGATAGGCTG
TCTTTACCTCCAGTAACTTCAAAGTAATCGCTGTGCCCCAGCCATGGCTGCACCGTTTTTCTCAACACCCTTTCAGCCTTATGTTTATCAGTGACCCTCG
AGCTCACTTGCACTGTGCCTTCAATCTCTACGAAGCAACGCTGGAGAAGTTGATCAGTGAAGTTTCCATCAAAGATAGATCATAGATGGATAAACAAATA
GAGAGGGAGAGTGGCTTACATCATAGGCTGCAGCAAGAAGGTTCATGTCCCAGCCAATGGTCGAAACAGATGGTTTATGCTCCATGA

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G27760.1 Uncharacterized protein protein coding CNT0002193 252 115 CDS Trans
GLYMA03G27760.2 Uncharacterized protein protein coding CNT0002193 252 115 CDS Trans
GLYMA06G38062.1 Uncharacterized protein protein coding CNT0002193 330 115 CDS_UTR Cis
GLYMA06G38062.2 Uncharacterized protein protein coding CNT0002193 330 115 CDS_UTR Cis
GLYMA14G32106.1 Uncharacterized protein protein coding CNT0002193 229 113 CDS Trans
GLYMA14G32106.2 Uncharacterized protein protein coding CNT0002193 235 115 UTR5 Trans