Detailed information on CNT0002196 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P43296|RD19A_ARATH, E-value = 6e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002196

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.0230.3520.83800.2790.350.6850.770000000.162leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.1

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MTSTNASIFASSTQPCLPVSPTISNKLASPCLNVSSPRSYLVKKKHVKWEKRAWKLNNE*

>peptide 2 (37 aa)
MRQSLHLPRNHACLCLLPFQTSLLVLVSMFRHQEVTL*

Sequence

>CNT0002196
GCAACTTGCAGAAGAAACAATAACAAGAAGGAGAGAACAACAAAAGATATAGACTAATCAAAGAGAGAAAACCATCATCTTCTGTATCATCTTCTCCTTT
AATCAACTCACATCCCAATTTTGAACAACACATTATGGCACAAGACAGCCCCAGAGAGTAACTCTGGAGGACTATTCTAGTTTCTCTACATCTCAGTACT
TCACCAGCATAGTTCGGACAACACTGCTCCAGACCTCAAACTGAAGGCTCTAACTTTGCTCCAGACTTAGATATTGGAGGCTCCAACTTTGCTCCAAATA
TTGTTCTCGGGTAGATGTGGATCGTGCTGGGCTTTAACCACAGGATCTATAGAAGGAGCCAATTTTCTTGCCACCGGAAAGGTCGTAAGTCTCAGTGAAC
AACAACTCCTTGACTGACAACAACGCGTATTAGATATCACTATCCTTATTCCAATCCAATAGCAAGGAGTCACCAAAATAGTGTGATTCATGACTTCAAC
AAATGCGTCAATCTTTGCATCTTCCACGCAACCATGCTTGCCTGTGTCTCCTACCATTTCAAACAAGCTTGCTAGTCCTTGTCTCAATGTTTCGTCACCA
AGAAGTTACCTTGTGAAGAAAAAGCATGTGAAATGGGAAAAAAGAGCATGGAAATTAAATAATGAATAGGTAGGTGGTGGGGATGATATTCAAGTTGGAG
TGTTTGTGCTTTAAAAAAATTTTGTTTCTCCAGAATAAAAGTTAATTTTGGATAACATTATTACAATACCATTATCTACAATCATTGTTTACAAGTTCAA
GCTTCCATCATGGGCTAAGTTTGAAATAGGGAGGGTTGCTGTCTATTGGTAAACCATGAATGGCCTCCCTCCTACCTCAGAAGAAAAGCCCTGGATTTGA
GATTGTCATTTGGTGAAATTGAGGTTCTTAACGAAAACTTGGACTTGATCAAGAGACAGATAGGTCTAGAAGGTGTGGAAATTTTATCTGCAGCAGATGT
CGATTCCTTGGCCAGAG