Detailed information on CNT0002198 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002198

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MCCFPFPVEVETFVKALIIEEFTCVLLQLLYQPEPTILVFFPF*

>peptide 2 (82 aa)
MSFLFLRREVKKKRDRGVIKTREIPLGQPTQEHKTGTELEHNARNLKSHKNNVRLFRTGSKAAVKSEEGLCDIAMIASYPTA*

>peptide 3 (50 aa)
WESYKSNRSLNPINTTSCSCEKQGLPCNKCESLSEQQEGPTEETLKIKGF*

>peptide 4 (92 aa)
MAEELSIAIPQSQASTTKKRASKNEKLCLEDYLHLVHSRQTLHLTINQLNQVIRIHGFKKIHHAPKYVASRVGVRGCVVFLFQLRLRHLSRR*

Sequence

>CNT0002198
GTGGGAATCTTACAAGTCTAACCGCAGCTTAAATCCGATAAATACCACATCTTGTAGTTGTGAGAAACAAGGGCTTCCTTGCAACAAGTGCGAGAGTCTG
AGCGAACAGCAAGAAGGACCTACAGAGGAAACCTTAAAAATAAAAGGGTTTTAAGGTTTTGGCCACTGCAAAACGTTGGATAGACTGAGGTAGCAGAAGG
AGGAACACACAAGTATTATCACAGCTCAATGGAAACCCCACCAAGAGAGAAAGGAAGAGAAAATAAAAAATAAAAACACACCCGAAAAGCAAAGCAAAGG
TGGAGGGAGCTATAATAGCATGGGATTGTAATCTTAGCTTTGCTTTAAGTCTTTTATTTGCACGCTTAGTGGGTTCTCCTGCTCTCTTTCTCTCTCTATC
TCTCTCTATCTATGTCTTTCCTCTTTTTAAGGAGAGAGGTTAAAAAAAAAAGAGACAGAGGTGTGATAAAAACCAGAGAGATTCCCCTTGGCCAACCAAC
CCAAGAACACAAAACAGGAACGGAATTAGAGCACAATGCACGCAACCTCAAGTCTCATAAAAATAACGTTAGGTTGTTTAGAACAGGAAGTAAAGCAGCT
GTAAAATCTGAGGAAGGACTCTGTGACATAGCTATGATTGCATCTTACCCTACTGCATAATTATCAAATTTGGACACCACTATTCCTAAACTATATACAG
TTTTACAATCTTCTAAGTCTCATTTTCCACTATCACTTGTGTATAACAGTGTATCCTCACATGAATCACTGTACCTATCACTTATTATGAAACTAAAAAT
TAGTCATGGTTATGAGTCTTATGAGTTATAACTTTAAGATACACACGTATCACCAGTTTGATTTCCGTTTTATAAAGTGAACAGCTTAACTTCTAATGAT
TTTGTGGAGGTGCATACTTTATGTACTCGTATTCGTTTAATTAATATTTAAATTTTAATATGATTAACAAGTGCACGTAGTAGTGCTGAGTGATCCCTTA
ACGAACTACTGAACTAACGTGCGCCTAATGACAGTATAAAAGGTGGCAATTCCGGTTTCTCTCTCGCTCTTTCCGTTTTGACTTACCATGGCGGAAGAAT
TATCAATAGCGATTCCGCAATCGCAAGCAAGCACCACGAAGAAACGCGCTTCAAAGAACGAAAAGCTGTGCCTCGAGGACTACCTTCACCTCGTTCACTC
TCGCCAAACGCTTCACCTCACCATAAATCAACTCAATCAGGTCATCCGCATTCACGGCTTCAAGAAAATCCACCACGCTCCTAAGTACGTGGCGAGTCGC
GTTGGTGTACGTGGATGTGTTGTTTTCCTTTTCCAGTTGAGGTTGAGACATTTGTCAAGGCGTTAATCATTGAAGAATTCACGTGTGTGCTTCTACAACT
ACTGTACCAGCCAGAACCAACCATACTTGTCTTCTTCCCATTTTAATTCCGT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA15G02350.1 Uncharacterized protein protein coding CNT0002198 1150 406 UTR5 Cis