Detailed information on CNT0002201 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C6X2|SCAM4_ARATH, E-value = 6e-16

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002201

Peptides detected in this lncRNA

>peptide 1 (42 aa)
SGSYKFLFIKSLGTNFLLNKSLLSYPGIQQALIDSMHKTRQR*

>peptide 2 (31 aa)
MNKTWNDLLRIRFLCPIKYVVESVAAFDWDV*

Sequence

>CNT0002201
ATCCGGATCCTATAAATTTCTCTTCATAAAGTCCTTAGGTACAAATTTTCTTTTGAATAAGAGTCTTTTATCCTATCCTGGGATTCAACAAGCTCTAATT
GACTCAATGCACAAAACCAGGCAAAGATAGCTTTCAAAGGAGCATTTTACAGTTCATTTTGTCACCATGCCTTTAGTTGATGAATAAAACCTGGAATGAT
CTGTTGAGGATAAGATTCTTGTGCCCAATCAAATATGTGGTGGAATCTGTTGCAGCTTTTGATTGGGATGTGTAAGTAAGAAAAAAATTCTAGATCCAGA
AGTTTGAAAACAATTTAATCAATTAGACCATAATAATAAATTAAATTTGAAACAACAATCAAGTAATCAACCAACCAAGTAATGAATAAATGAATGACGA
ATAAATAAATAGTTTTTAAGAAATCATACCTAACCAACTTGCAAAGGCCAAATATTGCAGCCTTTGAGCATGAATCGGTATCTTATTGGCAATATCATGA
TGAATGATTAGGAAAATTGGAGGCCAATTCTCATCATCAATAAGATCACCAGCTGATAACAAAAAT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G01380.1 Uncharacterized protein protein coding CNT0002201 320 152 CDS Trans
GLYMA01G01380.2 Uncharacterized protein protein coding CNT0002201 320 152 CDS Trans
GLYMA09G34400.1 Uncharacterized protein protein coding CNT0002201 537 231 CDS Trans