Detailed information on CNT0002206 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6NLH0|RPB9A_ARATH, E-value = 2e-47

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0019321, E-value = 9e-06 (Z. mays)
CNT0024087, E-value = 1e-14 (A. trichopoda)

Expression of CNT0002206

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.0540.9861.87213.8250.5020.4210.16502.582.4763.1421.4711.83514.45319.282leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415161718192021

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MERLKFVLPRIKIQCWGDLTYFICIWLSLF*

>peptide 2 (36 aa)
MSAMKFCRECNNILYPKEDREQKVLLFACRNCDHQE*

Sequence

>CNT0002206
TAGTAGTAATTAGTAGTATAAATATACTTGAAATATAATAGAGAGAGACAGCGGGCCATAGGAGGGAAAACAGGAGCACCCAAAAGGAGCGAAGAAGGAA
CATCGAGTAGCTTCGCTACTCCCTTCTCATCGTTGCCAAGATGAGTGCCATGAAATTTTGCCGTGAATGCAATAACATTTTGTACCCTAAGGAAGACAGA
GAACAGAAGGTTCTTCTCTTCGCTTGCCGCAACTGCGACCATCAGGAATGAGATACAGCACCCTGTAGGAGAGCGCACTCAGGTGTTGCAGGATGTAGCT
GCAGATCCAACGCTTCCTCGAACCAAGTCTGTTCGCTGCACTCAATGCAATCATGGTGAAGCTGTCTTTTTCCAGGCAACTGCTAGAGGGGAAGAAGGAA
TGACACTTTTTTTCGTTTGCTGCAACCCAAACTGTGGACACCGATGGAGAGACTGAAGTTTGTGCTTCCTCGGATCAAGATTCAATGTTGGGGAGATCTA
ACATATTTTATTTGTATTTGGCTTAGCTTATTTTGAGAAGTTAATCTTTTTTTTTTCTTGTCAACTTCCTGAAAAACTAATGAAAAAAAAAACTGCTGCT
CAAAATCTAACCTAAAACAAAGATGGGCTTTGTGGTCCACCCTATGATAGAGGAGAGATAATTTGTGGTTATCTGAAAAAACATGGCTGATGCGGGGACA
GTAATACTGATGTGTTGTTACCTACAGGTTCATAAACCGATTCAATACAATGTGAAATGAAAAATTTGATCTAAAAAAATTGAAAACTGAATAAAGCAAA
AATTGAACGGATAGAAAAATTGGAAAATTAAAAATTTTTATTGGAT