Detailed information on CNT0002209 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P04146|COPIA_DROME, E-value = 4e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002209

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MLTTAFSTPKTHGNPIQHQRTKHIEMDIHFVREKVAKGDVRVLHVPSRYQIVGIFTKGLPHILFEDFRASLSVREPPVSTAGVC*

>peptide 2 (60 aa)
MRYFFQLAVRLVHCTIFFFKKRENKNNKKLSNSVTILSKSSLLKIIYDDGLKNMTLKSKI*

>peptide 3 (91 aa)
MEIRYNISVPSILRWTFILSGKRSLKATYEFYMFLPVIRSSVFLPRAYLIFYLKIFEPVSVFVNLPFRLRGCVRIYDTYILYLCISPILIM*

Sequence

>CNT0002209
ATGAGATATTTCTTTCAACTAGCAGTGAGACTCGTGCATTGCACAATTTTTTTTTTTAAAAAAAGAGAAAATAAAAATAATAAAAAGCTGTCCAATTCGG
TGACGATTTTATCAAAATCGTCATTGTTAAAAATCATCTACGATGATGGTTTAAAAAACATGACGTTAAAGTCGAAAATTTGAGATACTTCTGGGAGAAT
CATCGTTGAAATCGTTAATTCAAAGATCGTTTTTGAAAAACCATATTTGAAAGTGTGTTTTGGCTTTGTTTACTCACTGATACTCATCAGGACCTTTCCC
TTTCCCGTTTCTTTGTGCGTCTTTGCCTAGCCAGGACCACCACAACTCTTCCCCACCGGTCACCGGCGCCATTTCAGGGCTTTTTTCTTTTCCACTTCAA
TGTTGACGACTGCGTTTTCAACACCCAAAACCCATGGAAATCCGATACAACATCAGCGTACCAAGCATATTGAGATGGACATTCATTTTGTCAGGGAAAA
GGTCGCTAAAGGCGACGTACGAGTTCTACATGTTCCTTCCCGTTATCAGATCGTCGGTATTTTTACCAAGGGCCTACCTCATATTTTATTTGAAGATTTT
CGAGCCAGTCTCAGTGTTCGTGAACCTCCCGTTTCGACTGCGGGGGTGTGTTAGAATATATGATACATATATTCTATATTTATGTATATCTCCTATTTTG
ATTATGTAATTAATTTTGTGCATATTCTGTCCAGATTCTTAACTAATTAGTGTCCTACTTTCTAGGTTAATTATGCTCTTGTATATTATATATATTCTCA
CGTT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA15G16451.1 Uncharacterized protein protein coding CNT0002209 960 351 CDS Cis