Detailed information on CNT0002221 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O13899|YF38_SCHPO, E-value = 1e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002221

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.9682.2112.6620.430.6570.4710.830.3460.5781.0790.7550.8240.4741.620.873leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.8

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTWLVFLISENKYKYILYVGFLEVLRFDFIYLFAWTWI*

>peptide 2 (62 aa)
MIGDNPAVDIRGARQTGHPWFSILTRTVVFKGKENHDKFSADLVVDTVEEAVDYILANECAS*

Sequence

>CNT0002221
TGTACACATAGCTATATCTTGAAAAAGTAATTGAGAGTGGTCTGTGTTTGTTGGGTTATTCATGGGCATTGGCTTTGTCGAAATGAAATGAAATCAAAAG
AAGCAAACAAAAAAGAGACACAGGAAAAGTAAATGCTATAATATATAGTTATATACTTGCATTCTACAAGGATTCAAAATTAAGAGAAGCATACAACTGA
GTTTGACACTTGAGACTTTCAATCTGCTGACAATTTTACTAGTTTTAGTTTAATCATATTTGAATTATGACTTGGCTTGTGTTTCTGATAAGTGAGAACA
AATACAAATACATTCTCTACGTTGGGTTTTTAGAAGTTCTTAGATTTGATTTTATTTATTTATTTGCGTGGACATGGATTTGATGGATCTGTGAATGACC
AAGGCTTTTCATTCAGGGTGGTTGAATTTTTTCTATGGATAAGTCTTGCAGAAAGATACAGATCATATGGAGCCCTTTTAAAATTCTATACTACTATACT
TACTGACAAGGTCCCACAAAAGGTAGACTAAATTTCCTTCTGAACGTCTGGGAATGGGAGCTTTCAGGATTGCATTAGAATCCATCTTCAAATAGGACTC
ACCCTTGTTCCTTGAGGTATACCTATTTTGGCAAACCACATTCATCTGTATTCAAGAATGCAGAAATTGTGCTAGAGAAACTAGTGGCGTCACTTTATGA
TGATTTCTATGATATAAATCATGATAGCGCTTCATATTTTAAAAACTTTACATGATTGGAGATAATCCTGCAGTCGATATCAGAGGTGCACGACAGACTG
GGCATCCTTGGTTTTCTATTCTCACCAGAACTGTGGTTTTCAAGGGGAAGGAAAATCATGACAAATTTTCAGCAGATCTGGTGGTTGACACTGTAGAAGA
AGCTGTGGACTACATATTGGCAAACGAATGCGCTTCATAGGCCACCGTCTGCTTTACGTGGCAAAGGTTTTGATTCTATAAGGCAAGGGTTCTAAAAAGA
GGATAATTTATGGCCTAATATTGGGATTCATTTAAAGCGAATATAAGTTACATCATGATACACTGGGTCAAGTTGATTTTTTTTTCAATGGCTCGTGTTT
GTTTGCATGATCAAGAGCTTTTAGTTGATTGCTTTTTCTAGTAAGCATTAGTTTAGCTACGCTTTCTTGAGCTGGTAGTGTTTTTCAAGATTGGACGGGA
TTTCACTATTAATATTGGGATTTGAAGCATTTCAGAAGATTGATTTTTCCAAGGAAACAAGTTTCACATTGCCTAGAAAGAGTTCTTGAAATGCTAGTAA
CTTATAGCTAATTCATATTGTGGATTTCCTTCTTTAATGGATCTCACTTTATTTTTTTATTTTCAATAAATTTTAACTAAGAATGGAAAGTATGCCCGAA
AGAGTAGTGTGTTGTTAGCACTCTTCAACTTTGCAATGAACTTGTGAGAGGGTTGAGCTTCTTTGCCCAAGATTTTGCCAAGAATTCAATTTGGATGGGT
TTGGCGTCCC