Detailed information on CNT0002226 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002226

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)26.54422.57129.2350.86652.8924.7457.7997.3140.3880.4650.5060.1840.63700.22leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)051015202530354045505560

Peptides detected in this lncRNA

>peptide 1 (82 aa)
AYFLASLHKCNLLVCVVDAYSYLTFSLKPLLSHCLHFLLFFPLLTLSLPCISTFLLPQGKQRWQGAIRKTISLPRMLSKVLE*

>peptide 2 (45 aa)
MRSGCIFLSNVLTQTSSISLSPLSSLFSPFNTFSSLHLYVPLTTR*

>peptide 3 (54 aa)
MAGCDKEDYFSAPNAEQGAGVNQQSTATVETLRPKLQRTPHQQLPPRRPACTSG*

>peptide 4 (34 aa)
MYITIYFMLCVISSSIKIPFQFPFVSSILSVGRA*

Sequence

>CNT0002226
GGCTTATTTCTTAGCCTCTCTTCATAAATGTAATCTCTTGGTATGCGTAGTGGATGCATATTCTTATCTAACGTTCTCACTCAAACCTCTTCTATCTCAT
TGTCTCCACTTTCTTCTCTTTTTTCCCCTTTTAACACTTTCTCTTCCTTGCATCTCTACGTTCCTCTTACCACAAGGTAAACAAAGATGGCAGGGTGCGA
TAAGGAAGACTATTTCTCTGCCCCGAATGCTGAGCAAGGTGCTGGAGTGAATCAACAATCTACAGCAACAGTGGAGACACTGCGACCAAAACTACAGAGA
ACTCCACATCAGCAGCTTCCTCCAAGACGACCTGCATGCACATCTGGTTGAGATAATTTCGTGAATTACTATAATGTGGAGAGTAGACTTAATAAACGGA
ACAAGGATTTGCTCAGCCAAATTTACTATTACAAAACTCATGATGTTCCTGATCTGATGTATATTACAATTTACTTCATGCTTTGTGTTATTAGCAGTTC
AATAAAAATTCCATTTCAATTCCCTTTTGTTTCTTCTATTCTATCTGTTGGACGGGCCTAACAAGTAACAACAATGGGAGATGGGACGTGAGGATCAAAT
TAATCTCAAAGCATAGCACTTTTGAGATTTTTTCAATGGGACATAATACTTTTTTTTTTAAGGTTTACAACAATCTCCCTTGTAGGATACATGATATAAT
GTTTTTCAAATAATAAAAGAAAGTTAGTATAAAAATAAAAAAGAAGAAGG