Detailed information on CNT0002228 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M7X7|RL291_ARATH, E-value = 2e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0024038, E-value = 9e-24 (A. trichopoda)
CNT0012615, E-value = 7e-37 (S. tuberosum)

Expression of CNT0002228

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)24.6924.80723.94224.41921.9066.4299.0577.17298.419103.928107.203100.31132.18293.059166.443leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)020406080100120140160180200220240

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKSGEIATEEE*

Sequence

>CNT0002228
TATTTTTTAAAAAGTTAATAATTATGTTTGGACCATTTTCTGGGCCGTTGGTTTATGGGCCTAGTTACATGTAGTGCAGAAACGCCGAAAAGGCTTCGTC
TCAATCAAAGGTAGTATATTTAACGCTACCTCCCAAAAAACCCTAGCCGGCCGAACTGCACCTTCACCTTCCCTTCGAGATGGCAAAGTCTAAGAATCAC
ACAGCGCACAATCAGTCCTACAAGGCCCACAAAAACGGCATCAAGAAACCCAAGAGGCATCGCCACACTTCCACCAAAGGGATGGATCCCAAGTTTCTGA
GGAATCAGAGGTACGCGAGGAAGCACAACAAGAAGAGCGGCGAAATTGCCACTGAGGAAGAGTGAAGTGGCACTTTCTAACGGAACCATTAGGGTTTTTT
TTTAAGCTCGGTTTTTTTTTGTTTTATTTTGTTTTTAATGGTTGACTTTGTTTGAAATCAACGTTCAGTAGTATAATTAAATTTGTTTTCAGAGAATGCA
GTGCTCTTATAGCAATTATTTTCCTGGTTTCTGCTGAAGACCCTTGAATTATTTATTTATCAGTGAAATGAATGTTAAGGTGTTTTGTGTTTCTTAGTCA
TTGCAAATTGCCTATGGCTATGCTCATGTGAGAGTTGAATGTTTGACTTAGCTGTTTTTTAATGCTGCAAAGAAAGGGGAGTTAGCTTTTGC