Detailed information on CNT0002256 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q38942|RAE1_ARATH, E-value = 7e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002256

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MERKKEKIQIPNNIFLGKKNDMMNVIQNTNAYLYSGNSKFKLNKTNHETITRYGNYSSNIT*

>peptide 2 (41 aa)
MIISGNFLASKIYSERTTTSPKIKNGICFKLQKNLGEPKII*

>peptide 3 (31 aa)
MLAHYFIVLSQLPVTKRFISGIQASSLMGASC

Sequence

>CNT0002256
CAACAACCATCAGAGGATGTCTCACTGTCATAGCATAGCAGCGCTCTGGGAGTTGCTGTGTGTGCACTGGATTTGACTGCCTTGTATCCCAGTATCTAAA
AGTAGCCAAAAAGACTCATGTGGAGAGGACAGAAGCATCAGATCAAGCAAAATTGTTAGCTTTCATACCATATTTAATAAGAAGGATACAATACATATCA
GCATCACAAAATACTAATCCCATAATGTGCAAAGGTAATAGGAAACACTTGATGCATGGAACAAAAATCAGACTAAACTGAAGAGCTTATTGGACTGTTA
CATAAACAAGGAAGAAGATATTACATTGTAATGATCATTAGTGGAAATTTCCTGGCAAGCAAAATATATTCAGAAAGAACTACAACTTCTCCAAAAATCA
AGAATGGCATTTGCTTCAAGCTACAAAAGAACTTAGGAGAACCCAAAATAATTTGAATTTTCAAATTGAAATTTGAAAGTAAGGCTGGTGTATCATACAG
CCAAGGAAAAGGAACTCGGCAGCAGAATAGTGGCAAGACAGACTACAAAGGTAACACACAGATACTGTTCAAATTATAGGGATTTAGGTATGGAAAGAAA
AAAAGAGAAAATACAGATTCCGAATAATATTTTCTTGGGTAAAAAAAATGACATGATGAATGTGATACAAAACACAAATGCCTATCTATACTCAGGAAAT
TCTAAATTCAAATTAAATAAAACAAATCATGAAACTATAACGAGATATGGAAACTATTCCTCCAATATCACCTAAGATATTCTAAAAGATATAATGTTGA
TATTACGGGATATTTTTCATATATTCTAATTTCTAAAGATATAATTTAAAAACAAATTGCTGTAAAGGCAGCAAATGCTAGCACATTACTTCATAGTCTT
GTCCCAGCTTCCTGTGACTAAAAGGTTCATTTCAGGAATCCAAGCAAGTTCTTTGATGGGTGCATCATGCAT

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G19260.1 Uncharacterized protein protein coding CNT0002256 557 309 CDS Trans
GLYMA08G19260.1 Uncharacterized protein protein coding CNT0002256 766 346 CDS Trans
GLYMA15G05740.1 Uncharacterized protein protein coding CNT0002256 950 345 CDS Cis
GLYMA15G05740.1 Uncharacterized protein protein coding CNT0002256 864 333 CDS Cis