Detailed information on CNT0002258 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q40345|IDHP_MEDSA, E-value = 2e-32

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002258

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.1763.8222.23203.2441.9022.7640.9975.5544.2643.0926.3338.20400.503leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.59

Peptides detected in this lncRNA

>peptide 1 (33 aa)
GALSSIINCCWCRPVNSRRVCFYCFQHSKSHPT*

>peptide 2 (69 aa)
MGFQKIRVGNPIVEMDGDEMTRVIWKLIKDKLIFPYLELDIKYFDLGLPHRDATNDRVTIESAEATLKG*

Sequence

>CNT0002258
TGGTGCTTTGTCTAGCATTATAAATTGTTGTTGGTGCAGGCCTGTTAACTCTAGACGTGTTTGTTTTTACTGTTTCCAACATTCCAAATCACATCCAACG
TGAATCCGTCATTCAACGTGATTGAAGTATCCAACGACAATTCATACGCACACTAACCTTACTGAGGGTGTTCATTGGGAATTGGTTGATTCCACACATT
TTATTTAAGCCAATAAAAAACACAAACACACGACCCATTTTTCTCTTGGTGTTGTAGAAATTGTTGTTTCTTCCTCTCTGAGTTCCAACTTTCACCTCAA
CCAAATACACAACAAAATGGGGTTTCAGAAGATAAGGGTTGGCAACCCCATCGTCGAAATGGATGGGGATGAAATGACCCGAGTGATTTGGAAACTGATA
AAAGATAAGCTTATTTTTCCTTATTTGGAGCTGGATATTAAGTATTTTGACCTTGGCCTTCCTCATCGCGATGCCACTAATGATAGAGTTACTATTGAAA
GTGCTGAAGCTACACTCAAAGGATAACTGAACTCAGGCTTCAGTGCCACCAATCTGTTGGTTCAACAGTAGATGAATCGTCCATTCATCTAACTAAGCTT
CAAATTGAGTCTCACCTGTAGCCCTTTGACATCCTGATATAGCTATATCCCCAAG