Detailed information on CNT0002265 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|A2RVQ5|AGL16_ARATH, E-value = 4e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002265

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MNEISLRWHKSKLVRIFGKTLVNLGKNKTIHLKPFGVVLRSH*

>peptide 2 (69 aa)
MPHFLHLYSLLHKPKIDPNLLFRFSYRKLEAFSFRINRRSSYFFCSSNLFFKFNLVLLLFKDSIRSSNF*

>peptide 3 (37 aa)
MNKPLVRFLVLFADRRRALLLAGKHLALSFSLLLVLN*

>peptide 4 (33 aa)
MRTPFKLISSWFSRLCSSLIPKPISSSPINCLFL

>peptide 5 (41 aa)
MNNIFLNIECVLMDHLPSSVALHFLFGSAPSFDRVQHFLDE*

>peptide 6 (35 aa)
MRFPYDGINQNWSEFLEKPWSISARTKPYTLNLLA*

>peptide 7 (31 aa)
NLMSIEKDIFFSLYHVAVFIVPHALPQTKLF*

>peptide 8 (57 aa)
MIQNEQTIGSISRSLRRSPSCFASRRQAPGSFFLSFVGFELNGIVLLTYCEQLWLVV*

>peptide 9 (41 aa)
MENEEAKNTNGSAKTMYKMRLPILLVWSEIDRIYMHLSVPS*

>peptide 10 (40 aa)
MTTSPITEQFLLMQLQSGTEIKCLISCEIKKKNYRLDISV*

>peptide 11 (70 aa)
MSEICLILSYPYEVPVYVQTCSFYKPLLGLGMDMYYWKDEQYILEYRMCFNGSFTFFCSSAFSFWICSIF*

Sequence

>CNT0002265
ATAATTTAATGTCTATTGAGAAAGATATTTTCTTCTCTCTCTACCACGTTGCCGTTTTTATAGTACCTCATGCCCTTCCGCAAACCAAACTCTTTTAAAA
TGCTGATTAGTGATTCCTCTTAATGATTCAAAATGAACAAACCATTGGTTCGATTTCTCGTTCTCTTCGCCGATCGCCGTCGTGCTTTGCTTCTCGCCGG
CAAGCACCTGGCTCTTTCTTTCTCTCTTTTGTTGGTTTTGAACTGAACGGAATAGTTTTGCTTACTTACTGTGAACAGTTATGGTTAGTTGTGTGACCTA
ACATGGAGAACGAGGAAGCCAAAAACACAAACGGATCTGCCAAGACAATGTATAAAATGCGGCTTCCCATCCTTCTTGTATGGTCAGAAATAGATAGGAT
TTACATGCACCTATCAGTTCCCAGCTAAGCCAGCCGCACTCTCAACAGGGTGAATCAACGGCCAAAGCAATGAGACCGGATAATCTCGTACCATACATAT
GTTGTACTGTTGAATGGAACAAATGTGGTTGATGAACTACAAGATCCAACTCAAAGAAGTCTGATCATTCTAGGGAGAAGTTGTTGCTTTGTTGGCTGCT
TGGTACAAAATGACAACCTCCCCGATTACTGAACAGTTTTTGCTAATGCAGCTGCAATCTGGTACAGAGATTAAGTGTTTAATTTCTTGTGAAATTAAAA
AGAAAAATTATAGACTTGATATATCAGTTTGAGTGGATACCCGAGTTTTATTGCTTTGGCTGATGGTTCACTGTATTGAGGCTGTGGCTGACTTAGTTGG
AGACTAATAGGTGCATGTAAATCATATCCATTTCTGACCTTATAAGAAGGATTGGATGCCACATTTTCTTCATTTGTACTCCTTGCTTCATAAACCTAAG
ATCGATCCAAATCTTCTGTTCAGGTTTAGCTATAGGAAACTTGAAGCCTTTAGCTTTCGGATAAATAGAAGGTCTAGTTACTTTTTTTGTTCCTCTAATT
TGTTTTTTAAGTTTAATTTGGTCCTTTTATTATTTAAAGATTCAATTAGATCATCTAATTTTTAAAAACAGTTCAGTTAGGTCCTTTATTTTTTAAAATA
GGTTCAATTTGGTCCAAAATTGATTTTATATGCAACCAAATTGAACCCATTTTAAAAAAAGGGACCTAATTGAAGTACTTTTTTTTAAAAATTAAATGGC
CTAATTAATTGAACATTTTAATAATAAGAGGACTAAGTTAAACATAAAAAATAAATTAGAGGACAAAAAAGTAATTAAACCTAAATAGAATTAAGCCAAA
TAAATGAGTGAAATCTGTTTGATATTGTCCTATCCATATGAAGTGCCTGTGTATGTGCAGACTTGTTCATTTTACAAGCCTTTGTTAGGCTTAGGCATGG
ATATGTATTACTGGAAAGATGAACAATATATTCTTGAATATAGAATGTGTTTTAATGGATCATTTACCTTCTTCTGTAGCTCTGCATTTTCTTTTTGGAT
CTGCTCCATCTTTTGATAGAGTTCAACATTTTCTTGATGAATGAGATTTCCCTACGATGGCATAAATCAAAATTGGTCAGAATTTTTGGAAAAACCTTGG
TCAATCTCGGCAAGAACAAAACCATACACCTTAAACCTTTTGGCGTAGTTCTTCGATCTCATTAGTTAAAATTTGGTCCTGCAGGGAAATAGATAATAAT
GTAAGTTATGAATATGCCATCAAAAGGATGGAATCTTAAGGGCAGAGATATAACTTGAACTGACCCATCATACCTTTTTCATGCGGACACCCTTTAAACT
CATCTCCAGTTGGTTTTCCAGACTTTGTAGTTCTTTAATACCCAAACCCATAAGTTCTTCCCCCATTAATTGCCTGTTTTTGCC

lncRNA-RNA interactions

Number of interactions: 16

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G06981.1 Uncharacterized protein protein coding CNT0002265 157 250 CDS Trans
GLYMA13G32810.1 Uncharacterized protein protein coding CNT0002265 1251 627 CDS Trans
GLYMA13G32810.1 Uncharacterized protein protein coding CNT0002265 1018 539 CDS_UTR Trans
GLYMA13G32810.2 Uncharacterized protein protein coding CNT0002265 1251 627 CDS Trans
GLYMA13G32810.2 Uncharacterized protein protein coding CNT0002265 1018 539 CDS_UTR Trans
GLYMA13G32810.3 Uncharacterized protein protein coding CNT0002265 1251 627 CDS Trans
GLYMA13G32810.3 Uncharacterized protein protein coding CNT0002265 1018 539 CDS_UTR Trans
GLYMA13G32810.4 Uncharacterized protein protein coding CNT0002265 1251 627 CDS Trans
GLYMA13G32810.4 Uncharacterized protein protein coding CNT0002265 1018 539 CDS_UTR Trans
GLYMA13G32810.5 Uncharacterized protein protein coding CNT0002265 1018 539 CDS_UTR Trans
GLYMA13G32810.5 Uncharacterized protein protein coding CNT0002265 1251 627 CDS_UTR Trans
GLYMA15G06491.1 Uncharacterized protein protein coding CNT0002265 1786 667 CDS Cis
GLYMA15G06491.1 Uncharacterized protein protein coding CNT0002265 1779 668 CDS_UTR Cis
GLYMA15G06491.2 Uncharacterized protein protein coding CNT0002265 1786 667 CDS Cis
GLYMA15G06491.2 Uncharacterized protein protein coding CNT0002265 1779 668 CDS_UTR Cis
GLYMA15G06491.3 Uncharacterized protein protein coding CNT0002265 1144 417 CDS_UTR Cis