Detailed information on CNT0002274 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C6X2|SCAM4_ARATH, E-value = 6e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0022947, E-value = 5e-06 (A. trichopoda)

Expression of CNT0002274

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MAFYSFILLAIDYEKIMICFKCRPVQILKSTLGYAT*

>peptide 2 (46 aa)
MYEILVGYPPFYSDDQITTCRKVPSLIGLMASHKHNNLLHLICSLI*

>peptide 3 (32 aa)
MKFGYVARNSISHTLTVGICEIIFVVGEKGIA*

>peptide 4 (38 aa)
TFVAREAIQGWVSLITDSFERLDKLVILLMMRIGLQFS*

>peptide 5 (48 aa)
MSLVINSNMVGFSYGLLSLFCLSFSFFPFSSQNPFFFPQPTKPVSEKR*

Sequence

>CNT0002274
ACTTTTGTTGCTAGGGAAGCCATACAAGGGTGGGTCTCACTCATAACAGATTCTTTTGAGAGATTAGATAAGCTGGTGATCTTATTGATGATGAGAATTG
GCCTCCAATTTTCCTAATCATTCATCATGATATTGCCAATAAGATACCGATTCATGCTCAAAGGCTGCAATATTTGGCCTTTGCAAGTTGGTTAGAATAC
CCTAACGACCTCGAAAGAAAAGACAAAAGAGCCATCAATGGTTGAGCCAGAATCAGAGCCAACTACTAAAACAATCGAAGTAGCTAGAGAAGTCCACGTG
GACAGCTTCAACATTGGCAGATGAACAGGAGGAAGTTGGTGGTCATTTGGAGCAATAATGTATGAAATATTGGTTGGTTACCCTCCATTTTACTCCGATG
ACCAAATAACCACATGCAGAAAGGTACCATCCTTAATCGGCTTAATGGCTTCTCATAAACATAATAATTTGTTGCATCTTATTTGTAGTTTAATTTGATG
GTGACTTAACACTTAGTGTTATTTCCTATTGCTACTGCTTGTGTTCTTTCTAAGACTTAAATATTCTACCCATTACAGTTGATGTATGTCTAATGGCTTT
TTATTCTTTCATTTTATTAGCTATTGACTATGAAAAGATTATGATTTGTTTTAAGTGCAGACCTGTCCAAATACTGAAGAGCACATTAGGCTATGCAACT
TAATGTCTTGAAAAGTGGCCTGGTTATGATTGAAATAAACCACTTGTACAAGTCGAGTGTGTAACATCCCATTTTTTTTCATAAATAAATTTAAGAATTT
TTTAGTAAAAATAATAAAAATATATAAATAGAGTAAATAATAGGTCTTAAATGTCCCTAGTTATAAATAGCAACATGGTAGGTTTTTCATACGGACTCCT
CAGCCTCTTCTGCCTCTCATTTTCGTTTTTTCCCTTTTCCTCTCAAAACCCTTTCTTTTTCCCGCAGCCCACAAAACCTGTCTCAGAGAAACGATGATCT
CGGACTCATTCACCGTTGGATCGTCGTGAAATTTGAGCACCACGTTCGCAACCCAATTTCGAACATTTTCACCGTTGGGAATTGCAAAATCATGTCTGAG
CTTAGAGGAAAACCCTTCGCATTGTAGCTTTTTATTTTTCCGCAGAAACCCAAAACTGTCTCGGTAAAACTACGATCCCGGTTTCGTTAACCGTTGGATT
TTCATGAAATTTGGATATGTTGCTCGAAATTCAATTTCGCACACTCTCACCGTTGGGATTTGCGAGATAATATTCGTGGTGGGAGAAAAAGGAATCGCAT
GAAGACAGTACAAGTGGAGGCTTCAATCTCTTCTTCGTCTCTCTGACGTTCGAGAATTCTATCGGAGCAGTCGGAGGAAAAACTTGAGGAATCTTAGGGA
ACCGTTAGAGATGATGCTATCGCTGGCTGAAGACACGTGAGCTCGCTTAGAGGTAAGAGATGAGTTATTCACAATTGGAAATTAGTGAGAACATGTGTAG
GGATCCTTAGAGACATCAATTGGAATGAGTTTTGGGGTGTTTTTGCAATTTTCATTTTATCCTTATAATTATTACAGTGAATTATATGTTTGACAGACCA
ATTCTTGTGGAATTGATATGCTATTGTATTGAGCGTGAATCCTATAAATCGAGTACTTTTTCTAATTAATGTGAATTGATGAAATAAAGGAGAAATTTAG
AGAGAGATATTGATTTTGTATTTTTTCTTTTTCTTGTTGTTTAGGTTTTTAT

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G44310.2 Uncharacterized protein protein coding CNT0002274 1241 608 CDS Trans
GLYMA01G44310.2 Uncharacterized protein protein coding CNT0002274 90 96 CDS Trans
GLYMA02G20285.1 Uncharacterized protein protein coding CNT0002274 733 427 CDS Trans
GLYMA02G38380.3 Uncharacterized protein protein coding CNT0002274 455 502 CDS Trans
GLYMA02G38380.3 Uncharacterized protein protein coding CNT0002274 129 118 CDS Trans
GLYMA02G38380.3 Uncharacterized protein protein coding CNT0002274 147 161 CDS Trans
GLYMA02G40380.1 Uncharacterized protein protein coding CNT0002274 268 296 CDS Trans
GLYMA10G23998.1 Uncharacterized protein protein coding CNT0002274 243 128 CDS Trans
GLYMA12G20685.1 Uncharacterized protein protein coding CNT0002274 141 190 CDS Trans
GLYMA12G20685.1 Uncharacterized protein protein coding CNT0002274 136 149 CDS Trans
GLYMA15G36250.1 Uncharacterized protein protein coding CNT0002274 531 271 CDS Trans
GLYMA16G10287.1 Uncharacterized protein protein coding CNT0002274 102 86 CDS Trans
GLYMA16G32700.1 Uncharacterized protein protein coding CNT0002274 803 433 CDS Trans
GLYMA16G32700.1 Uncharacterized protein protein coding CNT0002274 102 131 CDS Trans