Detailed information on CNT0002280 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0008455, E-value = 2e-54 (S. tuberosum)

Expression of CNT0002280

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSSIIEHRFICILFAFFTIFGNHLDFAHFYS*

>peptide 2 (46 aa)
MRKAYSSSMDQGWGQYLIPKTYLSQIFFFNENGYYHCCASIQVLIR*

>peptide 3 (36 aa)
MSNEGHLTLICFESFVAHIMTKLIWVSSFGHLYDLG*

>peptide 4 (31 aa)
MNVRHRKGATPLFLQLNNFPCSIKVSYNFPI*

>peptide 5 (68 aa)
MISARAARRTTIVSPVTTRVEWSQKVWYSSLSERASGISCVTTHSWDMTNAQTMTSLVWPTYPIQHNL*

Sequence

>CNT0002280
GAAATACATTTCATCTCACTCAGCATGTTCTACCAGCCACAGAACTTTTCACTTTTAGTATATAACTAAATTTTATCCTTCACCATGTGTCCTTAAATTA
TGAGTAGTATCATTGAACATAGATTTATTTGCATTTTGTTTGCATTTTTTACCATTTTCGGTAATCATCTAGATTTTGCTCATTTTTACAGCTAGACACT
GTTGTGATGAACGTAAGGCATAGGAAAGGTGCTACCCCATTATTTTTGCAGCTTAACAATTTCCCTTGCTCTATAAAAGTTTCATATAATTTTCCAATTT
AAATAGCTTATATGTGTTGTCGGTATTCAAGAATAAGAAAGTTTGATTCTTTTGATGCGCAAGGCATATTCAAGTAGTATGGATCAGGGATGGGGACAAT
ATCTTATTCCTAAAACTTATCTTTCGCAAATATTTTTTTTCAACGAAAATGGATACTATCATTGTTGTGCTTCAATTCAAGTGTTGATAAGGTGAAGAGC
TTGATCTTGCCACTGCAATTTTCTTCTTCTTTTTTAAACATGATATGGAGTTAAAAATGGGAGTGCAAACAAGCATCAGCCTTAAGGCAATATGTTAAAT
GCTAGTTCTTGTAGATGAGCAATGAGGGGCACCTAACTTTAATATGCTTTGAAAGTTTTGTGGCACATATTATGACCAAGTTGATATGGGTCTCTAGTTT
TGGCCATTTGTATGACCTTGGATGATAATTGATCATATGCGTACACATAAGCTCTTAAAATCTTGTTGCTTATTGCAATAAGATTTTTTTTATTAGTGAT
CCATTACTCTTATGTGAATTTCTGGTTCTAATTGGTCTATACAGATAGATTTTTTTATTGTACATCCTATAAAACTAGTATCTGGTGACAAATTTGTTTG
TATAGAACAAGATATATGTTTAGCTTATGTAATTAAAACTTAATATGTTTTCCGTTATATATTTTATCATTTGTAAGTATTGTTTCATTTCAGGAGCATG
GTGGTAATCTCAATTAAGCAGTCAGTGCACATTTTAGTGAAGGAGACAGAAATCTAACAACCGAGGAGCGCAATTGCTAGAGCACGGGAGAATGAAGAGT
AATGATTTCAGCAAGAGCAGCCAGACGGACTACTATAGTGAGTCCAGTGACTACTAGAGTAGAGTGGAGTCAAAAGGTATGGTATAGCAGCCTTTCCGAG
CGAGCCTCTGGGATCTCCTGTGTCACAACCCACTCTTGGGACATGACCAACGCACAGACTATGACTTCCTTAGTCTGGCCAACCTATCCTATACAACATA
ACCTGTAAAAGCACACCATATATATATATATAGACAAATCCTTATGCTGGTATCTCATCTCATCCATTTAATAACAAAGTGGATTATAATTAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G25800.1 Uncharacterized protein protein coding CNT0002280 332 165 UTR5 Trans