Detailed information on CNT0002281 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0008455, E-value = 2e-57 (S. tuberosum)

Expression of CNT0002281

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MISARAARRTTIVSPVTTRVEWSQKVWYSSLSERASGISCVTTHSWDMTNAQTMTSLVWPTYPIQHNL*

Sequence

>CNT0002281
GAAATACATTTCATCTCACTCAGCATGTTCTACCAGCCACAGAACTTTTCACTTTTAGAGCATGGTGGTAATCTCAATTAAGCAGTCAGTGCACATTTTA
GTGAAGGAGACAGAAATCTAACAACCGATGGTTTAGGGAGCGCAATTGCTAGAGCACGGGAGAATGAAGAGTAATGATTTCAGCAAGAGCAGCCAGACGG
ACTACTATAGTGAGTCCAGTGACTACTAGAGTAGAGTGGAGTCAAAAGGTATGGTATAGCAGCCTTTCCGAGCGAGCCTCTGGGATCTCCTGTGTCACAA
CCCACTCTTGGGACATGACCAACGCACAGACTATGACTTCCTTAGTCTGGCCAACCTATCCTATACAACATAACCTGTAAAAGCACACCATATATATATA
TATAGACAAATCCTTATGCTGGTATCTCATCTCATCCATTTAATAACAAAGTGGATTATAATTAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G25800.1 Uncharacterized protein protein coding CNT0002281 332 165 UTR5 Trans