Detailed information on CNT0002289 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002289

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4510.4820.3700.430001.6192.2360.640.282.2941.6481.499leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MQCVVDVSVLCRLLLPIVVAYYGVEEKKLGTVFSCQLSSLTLRIK*

>peptide 2 (50 aa)
MDPEAVATLQLVKELVGVVSVCGRARQGKSFILNQLNFQLKSMHDSFFGV*

>peptide 3 (46 aa)
SGDNTLKEPSEQYRANVVISKFPSASLNCLCSCFPGSQHKIGNQKN*

>peptide 4 (37 aa)
MNGSAWTPKPSPRSSSSRNSLAWSLCAAVLARARVSF*

>peptide 5 (34 aa)
MSVKLFDIEDKVKNSDGFYTIGLEFMLLFCLLLS*

>peptide 6 (43 aa)
MNDIRSRKETSCQTILVCFFLIGMTYDFSSGIAFPSPPLGYVY*

Sequence

>CNT0002289
AGCGGGGATAACACCTTAAAGGAACCATCAGAACAGTACAGGGCCAACGTGGTCATTTCAAAGTTTCCCTCCGCAAGTTTAAACTGTCTCTGTTCTTGTT
TCCCCGGTTCTCAACACAAGATAGGGAACCAGAAGAACTAGAAGAAGATGATAAAGTATTTCAATTTCAATCGACGAAGGGACAACAGCGCCGATGCCTC
ACTGTAGGCGACGCCTTCTTCGTCGCCGGTGATTGATCCGGCGAGTCCAATTCGCCTTGTCTATTGCGACGAGAATGAACGGTTCCGCATGGACCCCGAA
GCCGTCGCCACGCTCCAGCTCGTCAAGGAACTCGTTGGCGTGGTCTCTGTGTGCGGCCGTGCTCGCCAGGGCAAGAGTTTCATTCTGAATCAGCTGAATT
TTCAATTGAAGTCAATGCATGATTCTTTCTTTGGAGTTTAGGGTTTAATAACTTTTATTTTAGTCATAGGCATTGTAGTATTGTACATTAGGATTGTGGA
AGGGCGTTCCGTGCTGTTCGAGGCACTGAATACGTTTATTGGCTACAGTTTTTAACTCATGGATAGTGATTCAGAGATGTAATTTTAAGTTAATCACTTT
TTTTTTTTTAGATTGGGGAGCGTTTTTGTCTACCTAATGAAATGCAGTGCGTAGTGGATGTGTCTGTGCTTTGTAGATTGTTATTGCCTATTGTTGTAGC
CTATTATGGTGTGGAAGAGAAAAAGTTGGGAACTGTTTTTTCATGTCAGTTAAGCTCTTTGACATTGAGGATAAAGTGAAGAATAGTGATGGTTTTTATA
CAATTGGTTTGGAGTTTATGCTGCTATTCTGCCTGTTACTGTCATGAATGACATAAGATCAAGGAAAGAAACCTCTTGTCAAACCATTTTAGTGTGTTTT
TTTTTAATCGGTATGACATATGACTTTTCTTCTGGCATTGCTTTCCCCTCCCCCCCTCTTGGATATGTTTATTAGAGTGAAATGCAACG