Detailed information on CNT0002291 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M9L0|APC11_ARATH, E-value = 8e-21

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007009, E-value = 1e-20 (V. vinifera)
CNT0042380, E-value = 9e-22 (A. thaliana)
CNT0022405, E-value = 1e-14 (A. trichopoda)
CNT0010904, E-value = 8e-10 (S. tuberosum)

Expression of CNT0002291

Peptides detected in this lncRNA

>peptide 1 (34 aa)
FFSHFLPTSRTFCPSTTRTSSKFFKRYWCSLLLD*

>peptide 2 (37 aa)
MLLLLGLGMHKKKHVRFVGWPLMDVVLTVNFLETTAR*

>peptide 3 (41 aa)
MAFDGCCPDCKLPGDDCPLTQMNIHGRNPEICLRRLVDKEI*

>peptide 4 (32 aa)
SSAIFSPPHAHFVPQPHAHRLSSSNGTGVRCY*

Sequence

>CNT0002291
GTTCTTCAGCCATTTTCTCCCCACCTCACGCACATTTTGTCCCTCAACCACACGCACATCGTCTAAGTTCTTCAAACGGTACTGGTGTTCGTTGTTATTA
GATTAGAAGCCATCGAAAGGTTTTCCACGCTTCCAACCTTGGCTCGTGAAACAGGCAAAGGAAATGGAGCAGAGGTTAGCAAACACAAGGAGAATGCCTC
TTAACGATAAGAAATTCATAGAAATTGCTCTCCTTTCTGACCTCTGAGTCGACGGTCGTCGCCCCTCCGACTACTGCAAGCTCACTGTCAAACTGGCCAA
GCAAGACAGCTCCGTGGAGGTTCATTTGGGCCAAACCCACGTTATGACCTTCGTCACCGCCCAACTCAGTAGTGTTTATCTCTTAATCCTCAAGTCCTTT
TGTGAAATATAGATGACATGTTGTTGCTTCTTGGACTTGGGATGCACAAGAAGAAACATGTGAGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGAC
TGTAAACTTCCTGGAGACGACTGCCCGCTGACTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGGTAGACAAGGAGATCTAAC
TGGTTATAGAGTTTCTTGTCTCCTTATTGGCGCAAAGGATGATTTAACTCCATATCCAAGGGCAGTACAAGATTCAGTTAAGCAAAAGAAAGGAACACGA
CTGTGGAATGGGGAAACCCCTCAAGTTGTACCGTCACATGCAAAGAAATTCTAGTGCTTGGGAAGCCAACAAATTTTACCAGTGATAGTGTGGGGGCTCA
ATAAATTCAGCACTGTTGCTGCCATTGAAGAACCAATTAAACCACCAGTTAAAGTAGAACACACCCAACTCTTATTTGATGGAAAATTTGTTGATGCTGC
TACTAGTTAGTCCTTTTTTTTTCCTCCCTTCATACTTTTAATTGCTTATAAGTTCAAGAATTCTCAATTTTATAGTAATGTAAATTTAGGGAAAAAATTT
AGACTCTCATTAATTATGTTAATTTTTGTATTATGTAATTAAATGATTTTATAATTGTTGAAAAT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G36893.1 Uncharacterized protein protein coding CNT0002291 492 174 CDS Trans