Detailed information on CNT0002295 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002295

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.0160.5930.60600.3523.0994.2444.14200.0720.2360.1720.14900leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MAHNCVLTTQAQLWVIPHFLHILTNLYLSNSTKHFVVYYNVMYMVVIHLYIALTDRM

>peptide 2 (38 aa)
LSSLLCSHNFIIVLSTRRLLKMVVFYSILAYLFSSLCV*

>peptide 3 (60 aa)
MKDCKWGQDYRIEVGEQDRMKFTLYLVLDSHNIIKEKIIQHATANRKHLEDKQRRIVVPN*

Sequence

>CNT0002295
CTCTCTCAAGTCTTTTGTGCTCTCATAACTTCATTATTGTTTTATCTACTCGTCGGTTGTTGAAAATGGTCGTTTTCTATTCGATTTTGGCTTATTTGTT
TTCTTCGTTGTGTGTTTGATTAGGCTTTATTCGAGTTTCCTCTTTTTGCCCCCATCTTCAATCTCGTGACATCTGAAGCGGATTTCTTCTTCTGAAAAGA
ATTCATCAGACCCTTTTTCCCCCGTCTTGAATGTTGCGAACATCGTAATTGATGTAGTGCGAAGCACAATGAGGTTGAGAGTTTGAGGAAAGGTTGTTTG
CAAAAGTGGACTCTGAAGTTGATATTATTTACAACAAGGCCAATGAAGGTGAAAGTGACAATGATGAGGATGATGTCGCTGAAGGTGAAGACACAGAGGG
TGATGCTGCAAGGTTAGGATACAAAAGTTTTATTGATTTGACATCCGATGACAAGAAATTGTTGACTTTTGCAAGTGAAGACTTTGCATACCAATTTTAT
TATACCTATGGAAAATGACATGGTTTTGGTATTAGAAAGGATGAAGTGAAGCATGATGAGAAAGAAAATATTATAATGCGTGAATTTGTGTGCAACAAAG
AAGGCTTAAAGGGACAATAAACATCTCATGAGGGTGGATTAGAAAAAGGAAATGAGGCCTCTGACTCGAACTAATTGTAAAGCAAAGCTACGAGTAAAGT
TTGATAATATATGGGGAGATTTATAGTTTCGTCATTTCTGGAGTAGCGTAACCAAATGTTTAAGTACTTACACTATATATTCAAATATAATGTTATAAAC
TGACCAACAACACTATGTTTAAGTACTTACACTATAAAACTGTGTTTCCATTATTGATCTTTGTACCTATCAATCAATAACGACAAACAACATTGGTTCC
TTCTTGTTGATATCATTGAAAAGAAACTTGTATTGTTAGACTCAAAACCTAAGGCAAAGGAATAAGATGCAAGAGAAAGATTTGTGAGGAAATTGGTAAG
CATTTGAATACTGTTAAGAATTTCAAATGATACAGTCTACCGTCAACAAAGTTAACCCATCATCTCACACAAGGTATATTTCTCGAGGTAATGCTGCTGG
ATGACAAATTTCAGCATTTCAATTAGTCAGACCTGATGACATTGGAGAACAAGGCCCTTTATTAAATGACTGTGATCTTTGGGTCGCAAAGTGGATGAAG
GACTGCAAATGGGGTCAGGATTACCGTATTGAGGTTGGTGAACAAGACAGGATGAAATTCACACTATACTTGGTGTTGGATTCGCACAACATCATCAAGG
AGAAGATCATTCAGCATGCAACAGCTAACAGGAAACATTTGGAGGATAAACAAAGAAGGATTGTTGTGCCGAATTGAGTTTCTATTTTCTTAGCGTTGTT
TTTTTGTGTTAACAACCTTTGCTCTTTTGTTGTGGTATGGCCCATAATTGTGTGCTTACTACACAAGCACAATTATGGGTCATACCCCATTTCCTTCATA
TTTTGACAAACTTATATTTGTCGAACTCTACCAAACATTTTGTTGTTTACTATAATGTAATGTATATGGTTGTTATCCATCTTTATATTGCATTAACGGA
TCGCATGC