Detailed information on CNT0002308 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002308

Sequence

>CNT0002308
GTGTACTCTTAACCACTTAGAAAAGGGTTTTAAAAAAAAGTTGGGCTATGATTAAATCAGTCAAGTTTGTTAGCTCCATGTGGCCCAATTAGCTTCACTT
CCAACACGAGGCATCACTTGGATCTTTGTCTGAGAGTCAACATTGAAGTTAGCCCCACACATAAATCCCTCGCTGTCAATCCTAGGCATTGCTTTCATCT
TCTTTGTTGGATGTTCAATGCTCATGAGACCATGCTCACTATGAAACATACACCCTGCAATTCAACGCCAGTAAAGCTTTAAATTCCAGACACAAGTTAC
CCTTTCAAATGTATTTACGTTTTTTATTAGTCCACATTTAATTTTGCCATTATCTTATAATTGTCGATCTGATATATAAAAATTAGTAATTTGAATGGTG
GTTTAGAATATTCAAAGCTGCAAATTTACATACCATTCGGAAATGGTGCAAATGATTTAGCACAGCTTGCTTTTATAAGCTCCAGATTTTCAGAAATAAC
TATGGAACCATCAGCTGCAACACCCCAG

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA15G07850.2 Uncharacterized protein protein coding CNT0002308 1444 528 CDS_UTR Cis
GLYMA15G07850.3 Uncharacterized protein protein coding CNT0002308 1444 528 CDS_UTR Cis
GLYMA15G07850.5 Uncharacterized protein protein coding CNT0002308 1444 528 UTR3 Cis
GLYMA15G07850.6 Uncharacterized protein protein coding CNT0002308 1444 528 CDS_UTR Cis
GLYMA18G42900.1 Uncharacterized protein protein coding CNT0002308 347 172 UTR3 Trans