Detailed information on CNT0002313 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O23044|PER3_ARATH, E-value = 3e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002313

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00001.6190.2140.1670.551.3131.191.6752.4111.8670.2450.495leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVLGLIILIFPLFLKSTFWMNLVLGIICQEYMF*

>peptide 2 (76 aa)
IVNAACHRPPRAHQHQPLLPLHHKRHLGNGATHGNHALCRDDHRHDREEKLEIPRVDEELDALTSRIKLEEGNTKF*

>peptide 3 (33 aa)
MLWFLTKWLCSRCSIILKLTLLKLHVLYCGRLW*

>peptide 4 (56 aa)
MHFHDCFVRGCDASALLNSTTNQVEKNARPNLTVRGFDFIGIIKSLVEAECHGVVS*

>peptide 5 (48 aa)
MLNLLHNNFMICSSLLNKGSQTLKVFCPIRALSTNYFFIVLGTIITCK*

>peptide 6 (29 aa)
MYSITLWHMLVAWIISMICHVTCSSTLGL*

>peptide 7 (34 aa)
MEPHMGTTRFVGMTTATTERKSLRSLGWTKSWMH*

>peptide 8 (58 aa)
MKAWETTQDEMMIAGGLHVVVFNKMVVFTVFNHFKIDTFEASCLILWQVMVKWLYYKF*

Sequence

>CNT0002313
TAATTGTCAACGCGGCATGTCATCGTCCTCCGCGGGCTCACCAACACCAGCCTTTGCTTCCACTCCACCATAAACGACACCTTGGGAATGGAGCCACACA
TGGGAACCACGCGCTTTGTCGGGATGACCACCGCCACGACAGAGAGGAAAAGCTTGAGATCCCTAGGGTGGACGAAGAGCTGGATGCATTAACTTCACGT
ATAAAGCTGGAGGAAGGAAATACAAAGTTCTAGAAATGTCACTTTTCAGGGGAGATGGTTACAGGAAAGGGAAGTTGAGTTGACAATCAAAGTTATGCAG
AAGGTAAATAGCTAAACCTTGACTATTTTTTCCTTTTAACTGTAAGCTTGCTTCTTGTTGAAATGGTTTTAAATGTAGAAGGGATCTATTGAGTATTACA
AAAACAACCCAGCAATGTCCATGTGTACTTTGGAAGAAAGGTAGCATCTTGGCGTTCAAAAAGTCGTGATCTTTGTTTGGAAAGATTTTATCCCTCTCCG
ACTTGGGTAATGAAAGCATGGGAAACAACTCAAGATGAAATGATGATTGCTGGTGGTCTGCATGTTGTGGTTTTTAACAAAATGGTTGTGTTCACGGTGT
TCAATCATTTTAAAATTGACACTTTTGAAGCTTCATGTCTTATACTGTGGCAGGTTATGGTGAAATGGTTATACTATAAGTTTTAATTTGAAATCCACAA
GATGTCAACCTACTAAGTGAAGTTACCTTAATCCTATATAAGTTGAAGTGAATAGATGGTATGGTATTAGGCTTAATTATTTTGATATTTCCTTTGTTTT
TGAAGTCTACTTTCTGGATGAACCTGGTCCTAGGAATCATATGCCAAGAGTACATGTTTTGATAACATGACACCAACATTATGCACTACAAAAACTCTTA
AAATCAATATTTATTAAAATGTTGAATTTGTTGCATAACAATTTTATGATTTGCTCAAGTCTCTTAAATAAAGGAAGCCAAACATTAAAAGTGTTTTGTC
CTATAAGGGCACTGTCAACTAATTATTTTTTTATTGTATTAGGTACAATTATTACATGCAAATGAATGGTAAAGCAGAATGTATAGCATCACCTTATGGC
ACATGTTAGTTGCATGGATCATCTCTATGATTTGTCATGTTACTTGTAGCTCAACCTTAGGACTATAAATCACTGACTATTATTGTGGAAACAACAAAGA
GAAATGAAAATTGCCGCTTTCAAGAAGCATCTGAGTGTTTACTATTTTATACTCTATTATATATAGTCACTCAAGCTTCTAGAATTTTTGTCAGCTGCAT
CAAAATGGGAAGCAACTTGAGGTTTTTGAGTCTTTGCATCAACTCATGCTCAACTTTAGCTTGGTTTTTATGTTAACAGTTGCCCAAAAATAGAGCAAAT
TGTTTTGAAATTTGTTCATGACCATATCCATAATGCTCCATCACTAGCAGCTGCATTAATAAGAATGCACTTTCATGACTGTTTTGTAAGGGGATGTGAT
GCATCAGCCCTTTTGAACTCAACAACCAATCAGGTTGAGAAGAATGCTCGTCCAAATCTTACAGTAAGAGGCTTTGACTTCATTGGCATTATAAAGAGCC
TTGTTGAAGCTGAATGCCATGGTGTGGTCTCTTGAGCTGATATCCTCACTTTGGTTGCCAAAG