Detailed information on CNT0002317 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002317

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.6431.8462.0660.9580.5221.4440.8221.0594.6155.3214.6684.8954.4033.0063.524leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MHRNWNMCCNLQVFGLTKEVAIASSAKSFMVEHLFCET*

>peptide 2 (34 aa)
MVKHRWCFPGAERNVISSCGSEAFKVFMYCMFTP*

>peptide 3 (36 aa)
MILSWLSDAFNNTIKYYRKPILHLKLVDCWSCQCLS*

>peptide 4 (32 aa)
MFLGDYSKLHKCIMGSKLYRKSKRRYKFISQK*

Sequence

>CNT0002317
CGTTGAAACCAGTAGCATGTTTTGAAAAGGTTTTGTTATTCATTGGAAGCTCAGGAGTCATCTTTTGAAGAAGATAACCATCCTTCTATATTTCGCTCTG
TTTTCATTCAAGGTTGTGCTTCATATGAACAAAATCCATCTTCTTGGAATAAAGTTGTAGACAGTGTGAAGAGAAGACACACTTAAAAGGTCTGTACTTA
TACTGGGTCAGTTCAATTTGTTGAGATTTGTTTCCTCGGTTAAGAGCAGTGGAGGTTTCCTTTTGGTTAAAAGCTTTTTGGAGACACTTGCACAAGAAAT
CCTTTGATGCCCCGGGACTTTTGTTCTTTGCAGTTAACACTGTATGATACTTTCTTGGCTCTCAGATGCATTTAACAATACCATTAAATATTATAGAAAA
CCAATCCTTCATCTAAAGCTTGTAGACTGTTGGTCCTGTCAGTGTTTGAGTTGATTCAGGAATTACTGTTGATCTGAAGAACTCTACCAGTACCTGACTT
ATACATGCACAGGAACTGGAATATGTGTTGCAATTTGCAAGTATTTGGTTTGACAAAAGAAGTTGCTATTGCCTCAAGTGCCAAGAGTTTTATGGTAGAA
CATCTTTTCTGTGAGACATAAGTCTTAGGCAATAGATATAGGAGTAATCCAAGTTATAACATGTTTGGTACCCCATTTGTCGGACAATAATTGCGTCTAA
TACCCACATCCAAGGCAAAGCTATATGGAGTAACTTCAGGTTTTTACGTTCCATATCCATATGCGCATTTCTCCCTGTTGAATGCAGAACCTAACAGGTG
CTTAGTAGACTATGGTGAAACATAGATGGTGTTTTCCTGGGGCCGAGAGGAACGTGATTTCTTCATGCGGAAGTGAAGCATTCAAAGTGTTTATGTATTG
CATGTTTACCCCATGATGCGGCCATCATTTCAAGTCATGAGGACTTGATGACCTCCAATAGTGTGGATAAGGCGGGATGCAACAGTGAGTAGTGGAAAAC
GGAAGGATTCTAAGCATCAAAGCGCTTTATCTTATCCATTCTCTGGTTTACTATCTCAGTTTCTCCTATTTGTGTAAAATAACTTGGGAGAAAAGTTCTT
CCGTATCATATTCAACTTTCAAAGAACCATCAACCAACTTAAAAATGAAGCAAAGCGAGTGAAACATAAACCATATTGCAATGTTTCTTGGAGATTATTC
AAAGCTACATAAATGTATCATGGGAAGTAAACTATATAGAAAAAGCAAAAGAAGATATAAATTCATTTCTCAAAAATAAGTAAATATATTGCATTGTAGA
CGCCATTTGTTGGGTTGGAGTATATTGAATAGCAAGAGAATGATCACTTGGACAGC