Detailed information on CNT0002324 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002324

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.6681.3382.0512.0842.6130.1431.0050.3144.2015.8795.8886.6533.3525.5562.907leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.57

Peptides detected in this lncRNA

>peptide 1 (64 aa)
ATSPPQSLFYKYAIFEDSTYHEIINRDLCFNKSKFFAVILVSHFSLISLSIHSLFPPFLIPRSL*

>peptide 2 (47 aa)
MSSGKTSVASFQGSPVSAGESEGGLISVQYQLNPSAVDSNAPGSESH*

>peptide 3 (94 aa)
MLVIYPLCILINVGGELNYHNGAASVLHCLAKHVLLLFNSSATFCCLCSMNIELEIFAFEAHELAMILFIMFWCLFLLMLHGVIVYVQKAHISE*

>peptide 4 (51 aa)
MILSFGSFVPFSLPHKTTLLIQKRKERMSLPVFNKEKMAYCSLASPTNSVS*

>peptide 5 (37 aa)
LHHLPNLCSINMLFLKTAHTMKSSTEIFVSTNLNFLL*

Sequence

>CNT0002324
GGCTACATCACCTCCCCAATCTCTGTTCTATAAATATGCTATTTTTGAAGACAGCACATACCATGAAATCATCAACAGAGATCTTTGTTTCAACAAATCT
AAATTTTTTGCTGTAATTTTGGTTTCCCATTTCTCCCTTATCTCTCTCTCTATCCATAGTCTCTTTCCTCCTTTCCTCATCCCTCGCTCTCTGTAATAAA
TAATAATTATTACCAACTCTTCCGCCATTGGATCTGCCCTTCCTTCCCCTTCTGGCAAAAAGGCATGTCATCCGGTAAAACCTCAGTGGCAAGTTTCCAG
GGATCACCTGTATCTGCAGGAGAATCAGAGGGTGGTTTAATTTCAGTTCAGTACCAACTCAATCCTTCTGCAGTTGACTCAAATGCTCCTGGTTCAGAGT
CTCACTAGTAAGTTCAAATTCATGCCACACATTATTTGATATGATCCTCTCCTTTGGCTCATTTGTTCCCTTTTCTTTACCTCATAAAACCACATTACTG
ATTCAGAAAAGAAAAGAAAGAATGTCATTGCCTGTATTTAACAAAGAAAAGATGGCATACTGTTCCCTTGCTTCTCCTACAAACTCTGTGTCTTGACTTT
CACAATATACATTTCTTTACATGTTGGTAATTTATCCCCTATGTATATTAATCAATGTTGGGGGTGAGTTAAATTACCATAACGGTGCTGCTAGTGTTCT
TCATTGCCTTGCCAAACACGTGTTGTTACTTTTCAACTCCTCAGCAACTTTTTGTTGCTTATGCTCCATGAATATTGAGTTGGAGATTTTTGCTTTTGAA
GCCCACGAGCTAGCTATGATTCTATTTATTATGTTCTGGTGTCTTTTTTTGCTTATGCTTCATGGAGTTATAGTTTACGTACAAAAAGCTCATATTTCAG
AATAATAAAATGGCTTATTTCTACTTTTCTTGCCAGAAAGGAAAATAAGACGTATGGCACTCTAAATTTCCAATTAAGAATAAGAAAGGTGTCAGATGTG
GCTTGTCTGATGTGATGCCCGTTTTGACTTTTTATTACTAGCATGAACACGTGACATTGCTTCATCTGGGATCCCAAAAGGAAAATTAAAGTAAAGTTCA
ACTTCGAATTGGATACGTTTAACATGCTTAAGTGGATAAATTTGGAGGTGTTTTAAATCAATGGCTATAAATAGGGATGAGCAACCTGTATTAATCAGTT
TCAGACATATTTACTGATAATAAAGATAAAATATTTTCATTTGGTGG