Detailed information on CNT0002325 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q93Y38|GDT13_ARATH, E-value = 7e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002325

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.323.6294.14401.0158.2845.6118.6522.2153.8554.5333.2194.06200leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.5

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAAIEDLLELSDLMRQAMTLLPDEDDDESSNS*

>peptide 2 (30 aa)
MRDLDCNRECKCLHQASVFQLHLRAINLSY*

>peptide 3 (70 aa)
MDTFIQLCPIGATTFIGFNIFHQILFQTLFQVMARSGDLTLELEPIAFTRSWCFSSWMEFCRIRRDGFSL*

Sequence

>CNT0002325
GTGTGCTTTTTGAAATTTTTGTATCAGAAATTGAATACAGTAGTAAAGATGAAACCCCCATTTGTTGAGTTCTAGAGAGAGAAACTCAGAAATCTAATTC
ATACCTTGCTCCTCTAGATCCTACTAGCCAAATCTCTGTTTTAGGGCTCAATTTCAATTGATCCCTAACCAGCAAGTGCGAGTTCCTTCGATTCGACGAC
AAATTCTCCGTTTAGGATCCGTTGATTGATTCATCCATGGCAGCGATTGAGGACTTGTTAGAACTCTCTGATTTGATGCGCCAAGCCATGACACTCCTCC
CCGACGAAGACGATGACGAATCCTCCAATTCCTAAAGACTTCCACTTTCCTCAAGATCGTTGCACTAAAAAATGTTGGTGCTAGTAAATTCGCAGTTCTC
AACAGTTTGATTAGACATCCCGTTTTGGTTGAAGAAAATTTGGATGGTGGACAAGGGAAAACTTCAGTTTAGCGTTTCTTTTCAAGATTTTGTACACCAA
TATTTTTTGAGTCTTTTATTTTAACATCTCTTGTTGAGTGGGTGATTGTAGCCAGATAACGACAATTGTAATGGATTCCTGATGGACACCTTTATCCAAC
TGTGCCCAATAGGTGCAACTACATTCATTGGCTTCAACATCTTTCATCAAATATTATTCCAAACATTGTTTCAAGTGATGGCAAGGTCAGGGGATTTAAC
ATTGGAACTGGAGCCAATTGCATTTACCCGTTCTTGGTGTTTTTCTTCATGGATGGAGTTTTGTAGGATCAGGAGGGATGGATTTTCATTATGAGGGACT
TAGATTGCAACAGAGAATGTAAATGCCTTCACCAAGCCAGTGTATTTCAGCTTCATCTAAGAGCCATTAATCTTTCATATTGATCCTTGTACATTGAGAC
CACAAAGACTAGTGTTGATGGAGTTTTTGTTGTGGGTGATGTCTAGCATAAGAAGTATAGGAAAGCTATTATTGTTGTTGCATTTTTAATACTTGTTTCA
TAACCTTTATATTCAAATAAATTAGATTACTTTATTTGATTCTTGGTTTTGAAATAGGTGTTTTGAATTTGATGGCCATGTTTTCTTCATGTTCTCAATA
TATGTATTCCATTATAC