Detailed information on CNT0002327 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q93Y38|GDT13_ARATH, E-value = 2e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002327

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.4422.5053.1500.3055.9443.4525.0661.1762.3832.662.3842.18800leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRDLDCNRECKCLHQASVFQLHLRAINLSY*

>peptide 2 (32 aa)
MAAIEDLLELSDLMRQAMTLLPDEDDDESSNS*

>peptide 3 (47 aa)
MYFTQQIVSHLFLDCHLYLSDLLISKFLLCLLMVFSLVYKFNFCVRR*

>peptide 4 (70 aa)
MDTFIQLCPIGATTFIGFNIFHQILFQTLFQVMARSGDLTLELEPIAFTRSWCFSSWMEFCRIRRDGFSL*

Sequence

>CNT0002327
TCCTTCGATTCGACGACAAATTCTCCGTTTAGGATCCGTTGATTGATTCATCCATGGCAGCGATTGAGGACTTGTTAGAACTCTCTGATTTGATGCGCCA
AGCCATGACACTCCTCCCCGACGAAGACGATGACGAATCCTCCAATTCCTAAAGACTTCCACTTTCCTCAAGATCGTTGCACTAAAAAATGTTGGTGCTA
GTAAATTCGCAGTTCTCAACAGTTTGATTAGACATCCCGTTTTGGTAACTCCAAACTCACGCTTAAACCCTATTCTATTGTTATGAAAAGTGAAACTATG
AGAGTGACTGTGGTAATTTAGGTGTTTTTATTTATGTGTACGAGGTCTTTTGGTCAAGATCTATTGTGATGCTATAGATGTAAAAAAAAATTGTGGTTTT
ATAAGTCATAATTATGTACTTTACTCAACAAATAGTGAGCCATTTGTTTTTGGATTGCCATTTATACCTTAGTGATTTACTTATTTCCAAATTTCTATTG
TGTTTATTGATGGTTTTTTCTCTAGTCTACAAGTTCAATTTTTGTGTAAGACGATGAAGCTAACTCTATCCATTTTTTGTCACTTGCAATTCTTTACGAT
TTATTTGGGTTAAGGTTACTTTACATTGCATGACATCATCAGATTCAAAATCATCACAGAAGAAGGAAATGGAAAAAGTATGTTTTTATTACTCTTTATA
GGAAAATATTGATGATGGCCTTCACTAATGTTAAAAGAGAAATGCAAGAAACACACTATTAATTGATTGAAATTTGTTGAAAATCACAAAATTGTATTGG
TCTCACTCCTTATTTATTGAAATCCACTCATGATTTTGTAGTTTTCAATAAATTTTAAACAATTAGAGTGTGTTGGAAGTAGTGTGTTAAAGCGTGCGTT
TCTAGTACTCATGTTAAAATATGCCAAGAGCTAGTGTCTTCCTTCACATAGATACTAGTTGTTTTGCTTCTTTATTTTTCCAATTTTAGTTTCCTGGTTT
CCCCATTACACCTCTCGGTCACTTGCCATGGCGAAAGAAGCTCATTTAAACATGTTGCAGCTGGCAGGGATTCTATACTCATATTAATTGGTTCAATTAT
TTTATATATTTTAATCTTCAGTTCAAATTTGGTACATGCTAAGAATTTATTAATCTTGTTAACTAGGTTGAAGAAAATTTGGATGGTGGACAAGGGAAAA
CTTCAGTTTAGCGTTTCTTTTCAAGATTTTGTACACCAATATTTTTTGAGTCTTTTATTTTAACATCTCTTGTTGAGTGGGTGATTGTAGCCAGATAACG
ACAATTGTAATGGATTCCTGATGGACACCTTTATCCAACTGTGCCCAATAGGTGCAACTACATTCATTGGCTTCAACATCTTTCATCAAATATTATTCCA
AACATTGTTTCAAGTGATGGCAAGGTCAGGGGATTTAACATTGGAACTGGAGCCAATTGCATTTACCCGTTCTTGGTGTTTTTCTTCATGGATGGAGTTT
TGTAGGATCAGGAGGGATGGATTTTCATTATGAGGGACTTAGATTGCAACAGAGAATGTAAATGCCTTCACCAAGCCAGTGTATTTCAGCTTCATCTAAG
AGCCATTAATCTTTCATATTGATCCTTGTACATTGAGACCACAAAGACTAGTGTTGATGGAGTTTTTGTTGTGGGTGATGTCTAGCATAAGAAGTATAGG
AAAGCTATTATTGTTGTTGCATTTTTAATACTTGTTTCATAACCTTTATATTCAAATAAATTAGATTACTTTATTTGATTCTTGGTTTTGAAATAGGTGT
TTTGAATTTGATGGCCATGTTTTCTTCATGTTCTCAATATATGTATTCCATTATAC