Detailed information on CNT0002332 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002332

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.8121.9391.73400.4940.4130.2430.6830.380.8790.4780.6020.4510.4740leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.61.71.81.922.1

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGKLVSLRQDQQPSSNSSFQLLYQYSVWWYKN*

>peptide 2 (37 aa)
MWEDEFVRCSQFPSLILKDKAVAPRKGHVRTHGSVME*

>peptide 3 (42 aa)
MLFPMVLVMCHVWSTIDTWKSKCTRAALKKLNLVEDRSIPRV*

>peptide 4 (46 aa)
QIDLDELESVSILSMTLAWDEFSFSTFQEAHYLLQVSLDQVPHMPF*

>peptide 5 (35 aa)
MYDALFLAWSWLKAREKDFNTLFNHWSTNLSESFG*

>peptide 6 (29 aa)
MLGHMVQSWSRQHKSWSGKRQIRKLVSRS*

Sequence

>CNT0002332
CCCAGATTGATTTAGATGAGCTGGAAAGTGTTTCCATTCTGTCAATGACCCTTGCATGGGATGAATTTTCCTTCTCTACTTTTCAAGAAGCCCATTATTT
GCTTCAAGTTTCTCTAGACCAGGTGCCTCACATGCCTTTTTGATATCCTTTCGGTTTTTGTTGTTTTATTTATCATCATTCCCTGCTTCTATCATTTTTC
ATGTAATTTGGAATATTTAAAGTTAAATGGTCAATTCTATTTTGTATCAGTTTTTACACCTTTGTGAATGAAAAAAGGCATTCTTTCATTATGGTTTGGT
TGGTCCTTGTTATGTTTGTTTCCTATAATCTAGAGGATCCTTTTCTTCTTCTTGGGTTCTGAAAAAATAAAAACATCAACTCCCGCCTGTATTTATGCTT
GATGTTATTTCCTATGGTGTTGGTTATGTGTCATGTCTGGTCTACTATTGACACATGGAAATCCAAATGCACTAGAGCTGCCCTCAAAAAACTCAATTTG
GTAGAAGATAGATCTATTCCAAGGGTATAAGCTCATTTCTTTCCTAATAATATGTAAGTTTTACTTGCAACTAGTTGTTACTTCCCTAAATTCCAATATT
TGTTTGACATGTTTCTTTAGTTGATATCTGTCTTTTGCATTTTCTTTTCCTTGGGTCTCGTTAAATGTTAATGCTCAAAGGCTATTTTCGTTATTGTTGT
ATTGTTTTTTGTATTATATGCTAATATTTTAAGAGTTAAATACAATGCAGTGCAAACTATATTTGGGCCAAGCCCATATACTTTCAATAGTCTAATTCTA
ACTCAATCCATAATAACTCTTTAACATTGTTCCCTAATCCCAAGTTTGAGCATAAATATTAATCATGCCTAGCTTGTTACAAATGAAATAACAGTGTTTT
CCGGTCATAACCTTTGTGAACAGATCTGTTAGTTGGTCACCTACCCTTATGTGGGAGGTAGATATAAGATTTTGTTGAACCTTCTCTCTGATAAAATGAC
AATTTATATGCTTATTCCTCTCATGAAAAACTGTTGCTGAAAGACAGAAAGACAAATACAACAGACATTGGAACTGTGTCTTAACTACACAACAAAGTTT
GCTTTATACAGTCTAATTGCAATGAATATAATTATAGGAGATTTTATTCTTATATACATGATTTGATATGCCTATAAATCACATTCTAATAAAACATGCC
TATAATTACAAAGATCCTAATTAAATAAGGGAACAAATCATAAAAAAATATAAAAAGAAGAATAATTCTTAAGAGATCATCTAGGATATTCTAAAAATAG
GGGGACTGAATGTCTTGATTTGGAAGAGGAATAAATTATTCAAGTTTGTTAAGATACAAATAATATTTTTGATCTCTTTAGGTGACTAACAAAATGTGTA
GGTTGAGGAGGCAAGTAAGATTTTGTGCCACTTATTTTGAGGCAAGTCAAAATGTGCAGTGGCTTTAAATATTTTAGAAAACTTAATGACCTTGGTTCAA
ATCCTATTTTGTGTTGTTTTTCTCTATTTTTATGATCACAAACAACAAAATGTAGCATAAACAACAAAAAAGTAATGTACTGGGCTTTGTGAGAAAGCAA
TAAACACTACTAAAATAATAGTATTCTACGACGCACATTCAACAACGGTGGTTCCAAAAATGATGTTGTTTTAGAGGCGGTGGCATTTTACTAAATAAGA
CATTTATTTCAACTACGTTTTTGTTGAAAACGGCGTCATCTGCGCGTTACAAAAACAGGTTTAGTGGACACCGTTGTTGAACTGCATTATCCAAAGACGG
GTTTTATAAACACCGTCTTTGAATCTGAAGTAAATTTTCATCTTTTTCCCTAGCATACTTGCACTCTACCCTAGCCCGCATTACCTCAGTCATTTTGCGC
CCTTAAGCTTGTCTCTCTAAGTTGGTTGCCGTCGTGAAGCACACCAACACTGTCGTGGTTGTCGTCGACGATTATACAGGCCAGATCGTCGACGATTATA
CACTTCTAGTTTTGAATATATATACCCTAGGGTATTATTGTATACTACTGATGCTGTGTATTTGATATAGAAAATCGAAAAGAAAAATTGGATTCGAGGC
CAGCACCTCCAGACAAGGTAAGAGTGGAAGGTAAGCTTAAGTTTTCATATCTCCATTGTGCCTTACAATTGCTTTATTTATACTAATTCCTTGGTAACAG
AATTTGACATTTTGTGCAAAGGAATATCTAAGGAATTATTGGCTAACAATTTATGGGTAAGCTTGTCTCCCTAAGGCAGGACCAACAACCATCTAGCAAT
TCTTCATTCCAACTTTTGTATCAGTATTCCGTATGGTGGTATAAAAATTAGATCATCAACCATCTAGCAATTCTTCATTCCAGGTCAGCTTCCTTTCTCC
CTTTCTTTCTTATACGTAGTCTTATGGTGTACCCCTGGCCATCTTTGATTTTCCTTTTATCTGCACCCCTGGCTTCTGTATTTGGACATCTGGTTTGTGT
TCTCTGTTAACTGCCCCTTGTTCCTCAGCTTTTGTATCAGTATTCCGTATGGTGGTATAAAAATTAGAACAAAGGGAGCATAATGTTGTTTGTGCTTATT
ATGTTGTAGTTTTGAATTGTATAATGGTTTTTTTTAAGAGTGTCTATTATGCTAAAGAAAAAGGATACGTTCACTGCACATTCAAAATTCATTTATGTTA
ATCACTAAATATGCATTATAATATTCATAATTAAATTCCTATGCTGCCATATAGTACTCATCCAAAGTGATGTATGATGCTTTATTTCTAGCTTGGTCTT
GGTTAAAAGCAAGAGAGAAAGATTTCAACACTCTTTTTAACCACTGGTCTACCAATCTTTCGGAGTCTTTTGGTTAAGTTGGGTTGGGTTTCCTATATCT
TTTGTGGTGGGGTCTTGGTTGGGTTTCTTCTCTTTTTTGGAGGGCGGCACCATAGGTGTCTTGTATTTGTTCATCTTTCATCAGTACCTCTGGTACTGAT
ATGTTTATATTAATACTATATATTTTTTGCCATCCAAAAAAAAATATTCATAATTAAATTGTGCCTAACCACCTGGTATATCATCTGGAAATTGAGTTAC
AAGATGAAGTGGGGCCAGAATATGTAATGGTAATGGTTAGCAGACAAGTTATTTAGGAGAGACAAGATTCAACAAAGGCTGGAAAAGAGGAAGGGAAAAT
TAATCACAATGTGGGAGGATGAATTTGTGCGATGTAGCCAGTTTCCTTCTTTGATCCTTAAGGACAAGGCTGTAGCTCCAAGAAAGGGCCATGTTAGGAC
ACATGGTTCAGTCATGGAGTAGACAACATAAGAGTTGGTCAGGAAAAAGACAGATCAGGAAGCTGGTTAGCAGGAGTTAGTGAGTAATGATGAGTTGGAA
CTAGTTAGTTAGACTTGGGCATTGTTGAGAGCAGGCCAGCCAG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G48450.1 Uncharacterized protein protein coding CNT0002332 475 195 CDS Trans
GLYMA20G18400.1 Uncharacterized protein protein coding CNT0002332 612 276 CDS_UTR Trans