Detailed information on CNT0002338 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002338

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.8121.6962.3521.3211.0082.7131.2741.5932.072.3651.4151.4052.4273.3141.842leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.5

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MDHESLLQILLTVSCLRDASVSILTYCSVHAQIQIDSTHPPPIVLRLARENEASFTLFLLFLIGFGI*

>peptide 2 (53 aa)
MFATCGIISMRILHIADNSAFHILLICVIFMRGQLYVLILVMIKAAQQELRDY*

>peptide 3 (36 aa)
MESWDSCLGLRSNEKPHIFILKNTGRFFIISKCEIS*

>peptide 4 (91 aa)
MKPLLHFFCCSSLDLAFKDSHVCNVWNNIHANPTHCRQLSISYFVDLCYLHAWTALRSHLGYDQSCSTGVERLLMRMVSNFLPIYFSFLFP*

Sequence

>CNT0002338
GCAATGTGTGTGAAGGCTAGCTGTTGATCTAAAGCTCATAGATGGAAAGCTGGGATTCTTGTTTGGGACTGAGAAGTAACGAAAAACCCCATATATTTAT
TTTGAAGAACACTGGTAGGTTCTTTATTATTTCAAAATGTGAAATCAGTTGAAGCTTTTATTTGACTGAAGAACCATTGGTCACTGGTGGATGCATGTAT
TTTACCTGGCTGTGATGGATTGAGATAAACGCATTAGCACGCGTTTGTTGTGTTGGATCACATTATTGTGAGATTGGAAATGAAAGCTTTGGTGGTAAGC
AACTAAGCATGGGTTGTTTCTAACTTACAAATGTTAGTTTACTTTGCGAGATGGATCATGAGTCCTTGCTTCAGATATTGCTTACTGTGTCGTGTCTGAG
GGATGCCTCAGTATCTATCTTGACCTATTGTTCAGTACATGCCCAAATTCAGATTGATTCTACTCATCCACCACCTATTGTTTTGAGGCTGGCTCGAGAA
AATGAAGCCTCTTTTACACTTTTTTTGTTGTTCCTCATTGGATTTGGCATTTAAAGATAGTCATGTTTGCAACGTGTGGAATAATATCCATGCGAATCCT
ACACATTGCAGACAACTCAGCATTTCATATTTTGTTGATTTGTGTTATCTTCATGCGTGGACAGCTTTACGTTCTCATCTTGGTTATGATCAAAGCTGCT
CAACAGGAGTTGAGAGACTATTGATGCGGATGGTTTCCAATTTCTTACCCATCTATTTCAGTTTTCTGTTTCCTTAATGGTTGATTTTGGTGCAGTTGCT
TTTGATCGTGTGATTGCGGTTTATTTTTCACTGAACTAGATGCCCGTTACTTATTAGGTTTTACTATTTTAAGGGTTATAAAGTTGTGGCCGAATTTTCT
ATTTGGTCTTGCAAAAATAGCATGATTTTTTTTTTTCATTTGGTAACTTATTTAGTATTTTGTAAATTCCTTTATCCATTCTTA