Detailed information on CNT0002346 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C6X2|SCAM4_ARATH, E-value = 5e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0022947, E-value = 4e-06 (A. trichopoda)

Expression of CNT0002346

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSLVINSNMVGFSYGLLSLFCLSFSFFPFSSQNPFFFPQPTKPVSEKR*

>peptide 2 (38 aa)
MYEILVGYPPFYSDDQITTCRKTCPNTEEHIRLCNLMS*

>peptide 3 (44 aa)
GWPPWLTFVAREAIQGWVSLITDSFERLDKLVILLMMRIGLQFS*

>peptide 4 (32 aa)
MKFGYVARNSISHTLTVGICEIIFVVGEKGIA*

Sequence

>CNT0002346
TGGGTGGCCACCTTGGCTTACTTTTGTTGCTAGGGAAGCCATACAAGGGTGGGTCTCACTCATAACAGATTCTTTTGAGAGATTAGATAAGCTGGTGATC
TTATTGATGATGAGAATTGGCCTCCAATTTTCCTAATCATTCATCATGATATTGCCAATAAGATACCGATTCATGCTCAAAGGCTGCAATATTTGGCCTT
TGCAAGTTGGTTAGAATACCCTAACGACCTCGAAAGAAAAGACAAAAGAGCCATCAATGGTTGAGCCAGAATCAGAGCCAACTACTAAAACAATCGAAGT
AGCTAGAGAAGTCCACGTGGACAGCTTCAACATTGGCAGATGAACAGGAGGAAGTTGGTGGTCATTTGGAGCAATAATGTATGAAATATTGGTTGGTTAC
CCTCCATTTTACTCCGATGACCAAATAACCACATGCAGAAAGACCTGTCCAAATACTGAAGAGCACATTAGGCTATGCAACTTAATGTCTTGAAAAGTGG
CCTGGTTATGATTGAAATAAACCACTTGTACAAGTCGAGTGTGTAACATCCCATTTTTTTTCATAAATAAATTTAAGAATTTTTTAGTAAAAATAATAAA
AATATATAAATAGAGTAAATAATAGGTCTTAAATGTCCCTAGTTATAAATAGCAACATGGTAGGTTTTTCATACGGACTCCTCAGCCTCTTCTGCCTCTC
ATTTTCGTTTTTTCCCTTTTCCTCTCAAAACCCTTTCTTTTTCCCGCAGCCCACAAAACCTGTCTCAGAGAAACGATGATCTCGGACTCATTCACCGTTG
GATCGTCGTGAAATTTGAGCACCACGTTCGCAACCCAATTTCGAACATTTTCACCGTTGGGAATTGCAAAATCATGTCTGAGCTTAGAGGAAAACCCTTC
GCATTGTAGCTTTTTATTTTTCCGCAGAAACCCAAAACTGTCTCGGTAAAACTACGATCCCGGTTTCGTTAACCGTTGGATTTTCATGAAATTTGGATAT
GTTGCTCGAAATTCAATTTCGCACACTCTCACCGTTGGGATTTGCGAGATAATATTCGTGGTGGGAGAAAAAGGAATCGCATGAAGACAGTACAAGTGGA
GGCTTCAATCTCTTCTTCGTCTCTCTGACGTTCGAGAATTCTATCGGAGCAGTCGGAGGAAAAACTTGAGGAATCTTAGGGAACCGTTAGAGATGATGCT
ATCGCTGGCTGAAGACACGTGAGCTCGCTTAGAGGTAAGAGATGAGTTATTCACAATTGGAAATTAGTGAGAACATGTGTAGGGATCCTTAGAGACATCA
ATTGGAATGAGTTTTGGGGTGTTTTTGCAATTTTCATTTTATCCTTATAATTATTACAGTGAATTATATGTTTGACAGACCAATTCTTGTGGAATTGATA
TGCTATTGTATTGAGCGTGAATCCTATAAATCGAGTACTTTTTCTAATTAATGTGAATTGATGAAATAAAGGAGAAATTTAGAGAGAGATATTGATTTTG
TATTTTTTCTTTTTCTTGTTGTTTAGGTTTTTAT

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G44310.2 Uncharacterized protein protein coding CNT0002346 1241 608 CDS Trans
GLYMA01G44310.2 Uncharacterized protein protein coding CNT0002346 90 96 CDS Trans
GLYMA02G20285.1 Uncharacterized protein protein coding CNT0002346 733 427 CDS Trans
GLYMA02G38380.3 Uncharacterized protein protein coding CNT0002346 455 502 CDS Trans
GLYMA02G38380.3 Uncharacterized protein protein coding CNT0002346 129 118 CDS Trans
GLYMA02G38380.3 Uncharacterized protein protein coding CNT0002346 147 161 CDS Trans
GLYMA02G40380.1 Uncharacterized protein protein coding CNT0002346 268 296 CDS Trans
GLYMA10G23998.1 Uncharacterized protein protein coding CNT0002346 243 128 CDS Trans
GLYMA12G20685.1 Uncharacterized protein protein coding CNT0002346 141 190 CDS Trans
GLYMA12G20685.1 Uncharacterized protein protein coding CNT0002346 136 149 CDS Trans
GLYMA15G36250.1 Uncharacterized protein protein coding CNT0002346 531 271 CDS Trans
GLYMA16G10287.1 Uncharacterized protein protein coding CNT0002346 102 86 CDS Trans
GLYMA16G32700.1 Uncharacterized protein protein coding CNT0002346 803 433 CDS Trans
GLYMA16G32700.1 Uncharacterized protein protein coding CNT0002346 102 131 CDS Trans