Detailed information on CNT0002348 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9S9T7|VP282_ARATH, E-value = 1e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002348

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.1230.1970.4020.5370.11700011.2969.32112.54415.18614.39700leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213141516

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MYLQTYPHPIMQQHCHEGRVRRGKMKMKLPSLLWCQLISCTHL*

>peptide 2 (62 aa)
MCDVWEVRGVMWFCSIITRDETRRGCVWLSTYYYCSLQHRRVAVENNLSFFQFLFLFLLFYTY

>peptide 3 (40 aa)
MGGAWCDVVLFNYYARRDETRLRVAEHILLLQLTASTCSS*

Sequence

>CNT0002348
GCCTTGCCCATAAAGTAAAAGCTTTAATGATCAGCACCAAAAAGCTACTATAATAATTTGTAATTATACAGGCCTTGAAAATTAATATATTCTATAACTG
TCACAAAATAGATAAATGGTCTCCTTCCAACAAGACATTAATAAACTTAAAATAAAGTAAAAAAATAAAAATAAAAGCACCAGGAAGCAAATGTATTTAC
AAACATACCCCCACCCAATCATGCAACAACATTGCCATGAAGGAAGAGTAAGAAGAGGCAAGATGAAAATGAAGCTGCCGAGCCTGTTGTGGTGTCAACT
CATCAGCTGCACCCATCTTTGACACCCTTGTAAGTCATTCCTTCATTTTTGTTTTCCCCTCAAAATCATGTAACAAAGTAATGCAATTGTAAAGACAAAT
ATAACATATATTCATCAATCATGTGGGGATAGATATTATTAATATATCTCCAACATCAACATAGGCGTTCAGAATGGCCTCAGCAAAGTTGTCATACATT
TCTCTCTCGCGCTTGTGTTCCATGTCTGAAACTGAACACCAGCACACACTGCTTTAACCTTGTTTTTGTGAGAGTGGGGGATTGGAGAAGAGGACGAGAC
ACGCGCAAAGAGAAAAGTTTAGGTTCTGAAGAGCAAAACTAAAACTAAAACCACAAAAAGAGAGTGAGTGAGTTATTATGTATATGAGGAACAGAAGGGA
AATGGATCTAACATCATTTTTGCAGGCATTAAGATGACCCAAGAGAAGAAAATGAGAAAAAATGCAAAATTTGTGTCAGACAATGCATGAGTAACACGGT
ACAGGGAACATAACAGGGATTGGCATTGTGGGTTTCAACATGAAAATGAAAGCTGGCTTGTGAAGAACCAAACATGGAAAGGGACATAATCATAGTGACA
CGCATAGGCGAATGAAGGAGTTGAGAAAGGCATGAAAATCAGAATGAGATCGATTTGCAAAGAGAGAGAGAGAGAGAGAGAGAAGGGAAACGCCTATGTT
CATTGCCATTGAAATTGAATAGATGTGTGACGTATGGGAGGTGCGTGGTGTGATGTGGTTCTGTTCAATTATTACGCGAGACGAGACGAGACGAGGTTGC
GTGTGGCTGAGCACATATTATTATTGCAGCTTACAGCATCGACGTGTAGCAGTTGAAAACAACCTTTCTTTCTTCCAATTTTTATTTCTATTCTTATTAT
TTTATACTTAC